Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28 161 1e-34 >seq28 Length=1168530 Score = 161 bits (178), Expect = 1e-34 Identities = 891/1399 (64%), Gaps = 35/1399 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| | ||||||||||| ||||| | || || || || | |||| | | ||| Sbjct 330449 CCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGT 330508 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 ||||| |||||| |||||| || | |||| |||||| || || |||||||| Sbjct 330509 GCGTGAGACGTACGACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTT 330568 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||||| || || || | || |||||| | || ||||| | || ||||| || Sbjct 330569 TAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGA 330628 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATC-TCAAAGTGGGCTG 111849 ||| | ||||| |||| ||| || | || |||||| ||| ||||| ||| | Sbjct 330629 CAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAG-CGGCCG 330687 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAG-AGGTACA 111908 | || || || ||||| | || | || | | | | | | ||| ||||| Sbjct 330688 GCGGCATTGGTCTGCACGTGCACAACATCCGCG-CGGCGGGCAGCTACATAGCTGGTACG 330746 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 330747 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 330806 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | || || |||||||| | |||| |||||||| ||||| |||||| Sbjct 330807 GTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCAC 330866 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || || | | || || | || | |||| || | || || ||| | Sbjct 330867 GCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 330926 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG- 112144 ||||| ||||||| ||| || ||||| |||||||| || ||| ||| ||| || | Sbjct 330927 CGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATG-AGACGTGTGAAAAGCGA 330985 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || || ||| | || | ||| ||| | || |||||| |||| | ||||| Sbjct 330986 GGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGA 331045 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGC 112263 |||||||| |||||| |||||| || | || |||| | |||| | | Sbjct 331046 AGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-C 331103 Query 112264 CAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 ||| ||| || |||||| ||||| || ||||||| | |||||| || || | Sbjct 331104 CAG--GCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGT 331161 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 | || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 331162 TCGTCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCA 331221 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC--AGACAAAGATGAGACGGCTGT 112438 || | || ||||| || || || || | || | || | || || |||||||| || Sbjct 331222 AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAG--GAGACGGCGGT 331279 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTG 112497 ||| |||||||| || ||||| || || | || || |||| | | | || Sbjct 331280 GTGCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGACGTTGAGA-AGCGTGAGTTCA 331338 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTG-TCACAAAAAACCTAAACAGAGTTATT 112556 | | | ||| || || || ||| | | ||||| ||||||||| | |||||| Sbjct 331339 ACCACCAGCTTCTCTACACCGTGAC-AAAGCAGATCACACGTAACCTAAACCGGGTTATT 331397 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || | || | ||||| || ||||| || || ||| ||| | |||| || || Sbjct 331398 GACCGCAACTACTACCCGGTCGAGACGGCGCGCCGCAGTAACATGCGCAACCGCCCCATC 331457 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 || ||||| || || || |||||||| | ||||| || || | | |||| || Sbjct 331458 GGCCTCGGCGTGCAGGGGCTCGCGGACGCCTTCATCCTCATGCGACTGCCGTTTGTCTCG 331517 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 | || ||| || | || || || || || || || || || ||| | ||| Sbjct 331518 GCGGAGGCGCAGCGGGTGAACGCAGAGATCTTCGAAACGATCTACTTTGCTGCTGTCGAG 331577 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || |||| |||| ||| ||||| || || || ||||| ||| || || Sbjct 331578 TCGTCGATGGAGCTGGCGAAGGAGGATGGCCCGTACGAGACCTTCACGGGCAGCCCGGC- 331636 Query 112797 TCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGC----TTCACT 112848 || | |||| | || || || || |||||| ||| | | | || | | || || Sbjct 331637 -CAGCGAGGGCATTCTGCAGTTCGACATGTGGAAGAACGCGCGGCCCAACAGCGGTCGCT 331695 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 ||||||| | |||||||| | | | || ||| | || ||| || || Sbjct 331696 GGGACTGGGCCAGCCTCAAGGAGAAGGTGATGCAGGTGGGCATGCGCAACTCCCTGCTGG 331755 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || |||||||| || |||||| | || || | || ||||| || ||||| || | Sbjct 331756 TTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAATAACGAGTGCTTCGAGC 331815 Query 112969 CCTACACGACGAACATCTA 112987 ||| ||| |||||||||| Sbjct 331816 CCTTCACCTCGAACATCTA 331834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742120665920