Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 123 3e-23 seq23 86.0 7e-12 seq36 82.4 9e-11 seq24 82.4 9e-11 seq16 82.4 9e-11 >seq28 Length=1168530 Score = 123 bits (136), Expect = 3e-23 Identities = 550/856 (64%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || |||||||| | |||||||| | | Sbjct 331306 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACA 331247 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 331246 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331187 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || ||||||||||| | | | ||| |||||||| |||| |||| || || Sbjct 331186 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331127 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 331126 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 331071 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 106751 |||||| |||||||| ||| ||| || ||| |||||| || | ||| Sbjct 331070 GCGCTCGTAGAGCCGCTCAAACTCTTCA-CCATAGCAATCGCTGAGACCCGGGCACGTGT 331012 Query 106752 CTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 ||| | || | ||| || || | || || || || |||| || || ||||| Sbjct 331011 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTC-ACACGTCTCATAAACAGATCTGGG 330953 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 |||||||| | | ||||| || | || || || | || |||| || Sbjct 330952 ATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 330893 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | || || | | || || |||||||| ||||| |||||||| |||| | ||| Sbjct 330892 AGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCC 330833 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || || | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 330832 TTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 330773 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 107046 || | | || | || || || || || || || | || | | Sbjct 330772 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT-GTAGCTGCCCGCCGCGCGGAT 330714 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 107105 | || | ||||| ||||| || || | || ||||| ||| ||||||||| | | Sbjct 330713 GTTGTGCACGTGCAGACCAATGCCGCC-GGCCGCTTTGCTGATCACGGCACACTCCTTCA 330655 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 330654 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 330595 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 330594 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 330535 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| |||||| ||||| ||| | | ||| | ||||| ||||| | | Sbjct 330534 TGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAG 330475 Query 107286 CCACACGCATAAACAT 107301 | |||||||| ||||| Sbjct 330474 CGACACGCATGAACAT 330459 >seq23 Length=783180 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 229032 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 228973 Query 136226 GGTAGGA 136232 ||||||| Sbjct 228972 GGTAGGA 228966 >seq36 Length=2714535 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1632102 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1632043 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1632042 CAGGTAGGAG 1632033 >seq24 Length=874471 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 656195 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 656254 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 656255 CAGGTAGGAG 656264 >seq16 Length=698227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 445899 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 445840 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 445839 CAGGTAGGAG 445830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980534508640