Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 239 8e-58 seq22 89.7 1e-12 >seq28 Length=1168530 Score = 239 bits (264), Expect = 8e-58 Identities = 964/1491 (65%), Gaps = 47/1491 (3%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 |||||||| ||||| |||||| ||| | || | | ||| ||| ||||||||||| | Sbjct 332089 AGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTC-GCGTGCCATGTCTATCAG 332031 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | | ||||||||||||| | | | || | ||||| || || | ||| Sbjct 332030 CTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCGTCCGGCATGCC 331971 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | || | | | ||| || ||| | | | || ||||| ||||||||| Sbjct 331970 GTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCA 331911 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || | | ||| | |||| |||| ||| || | |||| || || Sbjct 331910 TAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCT 331851 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | ||| || ||| ||||||||| || |||||| || || || Sbjct 331850 CAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAG 331791 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | ||| || || |||||||| || ||||| || ||| | || || Sbjct 331790 AATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCAC 331731 Query 213053 CTCGCCGATGAGG--CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACA-GGTCCTCG 213107 || || || | | || || ||| ||||||||||| | || || || || Sbjct 331730 CT-GC--ATCACCTTCTCCTTGAGGCTG-GCCCAGTCCCAGCGACCGCTGTTGGGCCGCG 331675 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 | ||| ||||||||||| ||||||| ||||| | ||| | ||||||||| | | Sbjct 331674 -CGTTC---TTCCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAG 331619 Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 | ||| ||||||| |||||| |||||||| |||| || | ||||| ||||| Sbjct 331618 GTCTCGTACGGGCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACAGCAGCAAAGTAG 331559 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC 213287 || ||||| || ||||| ||| | | || ||||| | || || |||| | Sbjct 331558 ATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGC 331499 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 ||| | ||| | || || |||||||| || |||| ||||||||| | || | || | Sbjct 331498 ATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATG 331439 Query 213348 TTAGACTT-GGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||| || || || | ||| | ||||| |||||| ||| || | | ||| |||| Sbjct 331438 TTA--CTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGT 331381 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC--ACGTAGCCCC- 213462 | || ||| | || || || | || || ||| |||||| ||| | | Sbjct 331380 TACGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAA 331321 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 |||| || || ||||| |||||| ||| |||||||| || ||| |||||| | Sbjct 331320 CGTCG---ACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTG 331264 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 |||||||| | ||||| ||||| ||||| ||| ||| ||||| || |||| Sbjct 331263 GCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCT 331204 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| ||||| |||| | ||||||||||| | | | || || ||||| | Sbjct 331203 TCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGA 331144 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| |||| || ||| | | | ||||| || | | |||| || Sbjct 331143 TCTGAGACTCCAGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCT---TGAC-GCCG 331088 Query 213703 CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA---CCCTG 213758 ||| | | | |||||| | ||||||||| | || || | || || | ||| Sbjct 331087 CGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTG 331028 Query 213759 TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTC-T 213817 || ||||| || | |||| ||| || |||| | ||| || | | || | | Sbjct 331027 ---AGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGT 330971 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || ||| ||||| || |||| |||||||||| ||| ||||| | || | | || || Sbjct 330970 CT-CATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATC 330912 Query 213878 CACTCCAGAGTT---TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| | ||| ||| |||| |||||| |||||| ||| |||||||| ||||| Sbjct 330911 TTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGCCAAAGACGTCAGCGTGCCAGGGCTC 330855 Query 213935 CATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | |||| ||| ||||||||| | ||| ||||||||||||||| | ||| Sbjct 330854 GAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGT 330795 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 ||||||||| ||| || | || || |||||||| ||| ||||| || || ||||| Sbjct 330794 GTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT 330735 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 || ||| | || | | |||| || | || || ||||| ||||| ||| Sbjct 330734 GTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCT 330675 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||||| ||| || | ||| || || ||||||| | |||||||| || Sbjct 330674 GATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTC 330624 >seq22 Length=675415 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 48457 CTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAG 48516 ||||||||||||||| || | ||||| ||||| ||| || | ||| | || | Sbjct 514557 CTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGC 514616 Query 48517 CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 |||||||| ||||||| || || | || ||||||||||| || || || | ||| Sbjct 514617 AAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAA 514676 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACT 48634 || ||||| || | | |||||| |||| ||| | ||| ||||||||||| | Sbjct 514677 GTGCCGCTCCCCGTCGTT--CAGCATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATC 514734 Query 48635 TCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTACATGCCCCATATGTC 48687 || ||||| ||||||| | | | | ||| | |||||| ||| ||| ||||| Sbjct 514735 TCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTACTTGCGCCAGATGTC 514787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532380810240