Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq26 136 5e-27 seq28 116 5e-21 >seq26 Length=1058043 Score = 136 bits (150), Expect = 5e-27 Identities = 452/696 (65%), Gaps = 14/696 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || | | || || | Sbjct 410920 GCCATCGGCATCGACCTGGGCACGACGTACTCGTGCGTGGGCGTCTTCAAGAACGAGCAG 410979 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || ||||| || ||||| || || || || || || ||||| || Sbjct 410980 GTGGACATTATTGCCAACGACCAGGGTAACCGCACGACACCGTCCTATGTGGCCTTCACC 411039 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || | || |||||||| || || ||| || |||||||| | ||| Sbjct 411040 GAGACAGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTGGCCATGAACCCGAGCAAC 411099 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || |||||||||||||| | || || |||||||| ||| | | || Sbjct 411100 ACCGTGTTTGACGCGAAGCGCATGATCGGCCGCAAGTTCGACGATCCTGACCTTCAGTCG 411159 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || | ||||| | || | Sbjct 411160 GACATGAAGCACTGGCCCT-TCAAG--GTGACCGTCAAGGACGGCAAGCCGGTCATCAGC 411216 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | || || || || ||| | || || || || ||| |||||||| | Sbjct 411217 GTCGAGTACCAGAACCAGTCCAAGACCTTTTTC-CCAGAGGAGATCTCGGCTATGGTGCT 411275 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| ||||| ||| |||| | | |||| | || || || Sbjct 411276 GCAGAAGATGAAGGAGACGGCGGAGAACTTCCTGGGGCACAAGGTGAGCAACGCCGTCGT 411335 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||| || || ||||||| || | || || |||||||| |||||||| | | || Sbjct 411336 GACGTGCCCGGCGTACTTCAACGACGCGCAGCGCCAGGCGACGAAGGACGCCGGCTCCAT 411395 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || || || ||| || | || ||||| || || || || || || || || || || Sbjct 411396 CGCTGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCTATCGCGTACGG 411455 Query 195838 TCTGGA---CAAG---AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 |||| |||| ||||| | ||| || || || | ||||| || || || || Sbjct 411456 CATGGACCGCAAGGGAGACAAG---GGAGAGAAGAACGTGCTCATCTTCGACCTTGGCGG 411512 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 || ||||| ||||| | || | | || || || | ||||| || ||||| || Sbjct 411513 CGGCACGTTCGATGTGACGCTGTTGACGATCGAGTCCGGCGTGTTCGAGGTGAAGGCGAC 411572 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || || || || || ||||| Sbjct 411573 CGCGGGCGACACGCACCTTGGGGGCGAGGACTTCGA 411608 >seq28 Length=1168530 Score = 116 bits (128), Expect = 5e-21 Identities = 231/340 (68%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 |||||| || ||||||||||||| | || | ||| | || | | ||||| | Sbjct 460694 ATGGTGCTGCAGAAGATGAAGGAGATCTCTGAGACCTTCCTCGGCGAGAAGGTGAAGAAC 460753 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || ||||| || || || ||||| | |||| |||| || ||||| || ||||| | Sbjct 460754 GCCGTCGTGACGGTGCCAGCGTACTTTAATGATGCACAGCGTCAGGCAACGAAGGATTCC 460813 Query 195770 GCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | || || || || ||| ||| | | || ||||| || || |||||||| || || Sbjct 460814 GGTAAGATCGCCGGCCTTAAC-GTCGTCCGCATCATCAACGAGCCCACAGCGGCCGCCAT 460872 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 || || || || ||||||| | || || || | || |||| || ||||| Sbjct 460873 AGCGTACGGGCT------CAACAAGGCTGGCGAGAAGAACATCCTGGTCTTCGACCTCGG 460926 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 ||| || ||||| ||||| || || || | || || | ||| | ||||| || || Sbjct 460927 TGGCGGCACGTTCGATGTGTCCCTGCTGACAATCGACGAGGGTTTCTTCGAGGTGGTCGC 460986 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || ||||||||||| || |||||||| || |||||| Sbjct 460987 GACGAACGGTGATACTCACCTCGGTGGTGAGGACTTCGAT 461026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862103961920