Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 183 4e-40 seq22 156 5e-32 seq31 96.9 4e-14 >seq28 Length=1168530 Score = 183 bits (202), Expect = 4e-40 Identities = 210/280 (75%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| Sbjct 330818 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330759 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| |||||| || || || | |||| ||| || ||||| | |||||| || ||| Sbjct 330758 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330699 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || ||||||||||||| ||| ||| | || |||| || |||||||||||||||| Sbjct 330698 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330640 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| ||| ||||| |||| || |||||||| ||||||| | || | Sbjct 330639 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330580 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||| ||||| || || || || |||||| || Sbjct 330579 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAA 330540 >seq22 Length=675415 Score = 156 bits (172), Expect = 5e-32 Identities = 222/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | |||||| ||||| || ||||||| ||||||||| Sbjct 513030 GCCTTCTGGTACTCCCCCACCTTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 513089 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || ||||||||| || ||||||||| | Sbjct 513090 ATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACC 513149 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 513150 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 513209 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 513210 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 513269 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 513270 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 513328 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 513329 TGCGAAGTC 513337 Score = 132 bits (146), Expect = 6e-25 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 869638 GATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTC 869697 ||||||||| || | |||||| ||||| || || | | |||||| ||| | || || Sbjct 514539 GATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTC 514598 Query 869698 CTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGC 869757 ||||||| || || || |||||| || |||||||||||| ||||||| || || Sbjct 514599 GCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGC 514658 Query 869758 CAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTC 869817 || ||||||||||| ||||| ||||| ||||| | ||| |||||| |||| Sbjct 514659 AAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCATTGCCCAGTCCTTCATGTC 514718 Query 869818 GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTC 869877 | || ||||| | |||||| | |||||||| || ||| || |||||| | Sbjct 514719 GTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTACTTGCG 514778 Query 869878 CCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 514779 CCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAGCGGGTTCTC 514829 >seq31 Length=1489210 Score = 96.9 bits (106), Expect = 4e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 38954 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 38895 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| ||||||| | |||||||| |||||| Sbjct 38894 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 38849 Score = 93.3 bits (102), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | |||||||||||||| | Sbjct 1281499 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1281440 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | |||||| | |||||| | || || || ||||| Sbjct 1281439 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1281380 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | ||| || |||||| ||||| || || || |||| Sbjct 1281379 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1281336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136245671412