Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq28 165 1e-34 seq22 163 4e-34 seq31 98.7 2e-14 >seq28 Length=1168530 Score = 165 bits (182), Expect = 1e-34 Identities = 199/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| Sbjct 330818 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330759 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| |||||| || || || | |||| ||||| ||||| | |||||| || ||| Sbjct 330758 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330699 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || |||||||||||||| ||| ||| | || |||| |||||||| |||||||||| Sbjct 330698 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330640 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| ||| ||||| ||| ||| |||||||| ||||||| || | Sbjct 330639 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330580 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||| || ||||| || || || || Sbjct 330579 TGCCGGCGTTAAAGAGGGTCGGGGTGGC 330552 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| |||| ||||| ||||| || || | Sbjct 330977 CACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG 330918 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || ||| |||||||| || Sbjct 330917 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGG 330858 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||| ||||||||||||||||| |||||||| Sbjct 330857 CTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCC 330816 Score = 89.7 bits (98), Expect = 8e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2069564 tCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||| || || ||||| || | | | ||| |||| ||| || || | || |||| Sbjct 331914 TCCATAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGC 331855 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| ||||| ||||||||| |||| | |||| | |||| | |||| Sbjct 331854 CGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGC 331795 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 | || |||||||| || | || || |||||| | || || ||||| |||||||||| || Sbjct 331794 CGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGC 331735 Query 2069744 CGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 | ||| |||| | || ||| | ||||||||||||| ||||| Sbjct 331734 CCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCT 331686 >seq22 Length=675415 Score = 163 bits (180), Expect = 4e-34 Identities = 242/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | |||| Sbjct 513003 GACGTGCCCTCCGTGCTCA---TCACGCCAGCCTTCTGGTACTCCCCCACCTTCTTCTCG 513059 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 513060 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 513119 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 513120 CGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 513179 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 513180 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 513239 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | |||||||| || | | || ||| || | |||| Sbjct 513240 TCGCGCTCGATGTTCACCGCATCCACGATGATCT-CCAGCACGCGCTCGCGCGGCAGCTT 513298 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 513299 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 513337 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 514579 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 514638 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 514639 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 514698 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 514699 ATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 514758 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 514759 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 514818 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 514819 AGCGGGTTCTCCTGCTGCAGCGGCTC 514844 >seq31 Length=1489210 Score = 98.7 bits (108), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | |||||||||||||| | Sbjct 1281499 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1281440 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| |||||| | |||||| | || || || ||||| Sbjct 1281439 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1281380 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | ||| || |||||| ||||| || || || |||| Sbjct 1281379 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1281336 Score = 93.3 bits (102), Expect = 7e-13 Identities = 206/299 (69%), Gaps = 19/299 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 38954 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 38895 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || Sbjct 38894 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-- 38837 Query 653014 GTCGCT--CAACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCA 653070 |||| ||| | | || || ||| |||||| | || | ||||| |||||| || Sbjct 38836 TACGCTTCGAACTTC-AACATGCGCATGGACACCACCGCCCATGTCCTCTTCTACCCACA 38778 Query 653071 GGTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCG 653125 |||||||||| || ||||| ||||| ||| | || ||| | |||| Sbjct 38777 AAAACCGCTGGTGCGCACCAAAGCCAT----GACGTACATGCACAGCAACGATCTGCCCG 38722 Query 653126 ATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGAC---CCCTACAACCAGGAGGACTC 653181 ||||| || ||| ||||||||| | || || ||||||||| |||||||| Sbjct 38721 -CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGTGGCTACAACCAAGAGGACTC 38664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242570515804