Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28 383 2e-101 seq22 129 6e-25 >seq28 Length=1168530 Score = 383 bits (424), Expect = 2e-101 Identities = 965/1451 (67%), Gaps = 37/1451 (3%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 || |||| ||||| || | ||||||||| ||||| || || | || | ||| Sbjct 331882 AGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAG 331823 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || || || || || ||||||| ||||| | |||||||| ||| | || || |||||| Sbjct 331822 GTGAAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATG 331763 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||| |||||||||| || | | | || ||| || ||| Sbjct 331762 GGGGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCC 331703 Query 148431 CAGTCCCAGAG-CGGCGACGGTGTCACG-----TTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||| | | || | | | || |||||||||||| ||||||||||||| Sbjct 331702 CAGTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCC 331643 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || ||||||||| | | | |||||| || | | || |||||| || || Sbjct 331642 TCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CAT 331584 Query 148545 CT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA---GCAGCGC 148600 | || ||||| || | |||| ||||| ||| || | ||| | || |||| Sbjct 331583 CGACGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGC 331524 Query 148601 CGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 | ||| | | | |||||| |||| | | || ||||| || || ||||| || Sbjct 331523 CTCCGCCGAGA---CAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCAC 331467 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 ||| | ||| ||||| |||| ||||| | ||||||| |||||| ||| |||| Sbjct 331466 GCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACCGGGTAGTA 331407 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780 ||||||||| || | | || || || || | | |||||| | || || | Sbjct 331406 GTTGCGGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTTGTCACGGTGTAGAGAAG 331347 Query 148781 TTCA------AAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAG 148834 | || || ||| ||| | ||| | | || || ||||| ||||| || Sbjct 331346 CTGGTGGTTGAACTCACGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAG 331287 Query 148835 ATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCT 148894 |||||||| |||||||| | || | ||||||| || ||||| | ||| || || Sbjct 331286 GTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGA 331227 Query 148895 GCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAG 148954 ||| |||||| ||| | ||||| || || |||||||||||| ||||||||||| || Sbjct 331226 GCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAG 331167 Query 148955 CATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGC 149012 | | |||| || || || || | ||| | |||| || || | | || ||||| Sbjct 331166 GACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA--CACCTCCTGG 331109 Query 149013 GCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | || || ||| ||||| |||||| || |||||||| ||| Sbjct 331108 GCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAAC 331049 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | || || ||||||||| |||||| |||||| ||| || ||| |||| |||| Sbjct 331048 TCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTC 330989 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || || | ||| || ||||||||||||| || | ||| |||||||| | ||||||| Sbjct 330988 CCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCG 330929 Query 149193 CG--CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 || ||| || ||| || ||| ||||||| ||| || | || || | || Sbjct 330928 CGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGT 330871 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||| ||||| | || || |||| |||||||||||||| ||||||||||| Sbjct 330870 CAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGT 330811 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | |||| ||| | ||||||| || || || | ||| || | | || | | |||| Sbjct 330810 CCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGC 330751 Query 149368 CGTTAGTAG-AGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426 |||| ||| ||||| || ||||| ||| || | |||||||||| | || ||| Sbjct 330750 CGTTCGTACCAGCTA-TGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATG 330692 Query 149427 CCGCCG-CCGTACTTTGA-GATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGA 149484 |||||| ||| ||||| ||| | || || || ||||| ||||||||| |||| Sbjct 330691 CCGCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGA 330634 Query 149485 TGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGG 149544 ||||||| |||| | || ||| |||||||||| ||||||||| | ||||||| Sbjct 330633 TGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGG 330574 Query 149545 CCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACT 149604 | || | ||| ||| ||||||| || || | || | ||| | ||||||| || Sbjct 330573 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAGGTCGTACGTCT 330514 Query 149605 CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCT 149664 | |||| | | || |||| || ||||| | ||||| ||||| | ||| |||| Sbjct 330513 CACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGACACGCATGAACATCTGCT 330454 Query 149665 GCGGTCGCTCC 149675 | || |||||| Sbjct 330453 GTGGGCGCTCC 330443 >seq22 Length=675415 Score = 129 bits (142), Expect = 6e-25 Identities = 223/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||| || || ||||| || ||||| |||||||||| || ||| || | | Sbjct 513035 CTGGTACTCCCCCACCTTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 513094 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || |||||||| | ||| | ||| ||| || ||| | | || ||||| Sbjct 513095 CATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAG 513154 Query 120471 TCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 |||||||| || ||||| ||||||| ||| ||| || |||||||||||| | || | Sbjct 513155 CCGGTCCGCGACGAACTCGATGTACTGCGC-CATCAGCTCCGCGTTCATGCCAATCAGCC 513213 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 |||||||| || || || || ||||| ||| |||| |||||| ||| || || Sbjct 513214 GCACCGGCAGCG-CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATC 513272 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | |||| | || |||| |||||| | |||| ||| ||| |||||| || Sbjct 513273 TCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCG 513332 Query 120649 AAGTCCGTGTGCAGGCCCT 120667 ||||||||||| ||||||| Sbjct 513333 AAGTCCGTGTGTAGGCCCT 513351 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 121042 ACGATACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCG 121101 || || | |||| | |||||||||| || |||||||||||||| ||||| ||||| || Sbjct 514630 ACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCG 514689 Query 121102 TCCGTGAGCTTGTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTC 121161 || | ||| | ||| | | | |||| ||| ||| |||||||| |||||||||| || Sbjct 514690 TCGTTCAGCAT-TGC-CCAGTCCTTCAT-GTCGTTGCCCAGGTCGATCTCCTCCACCGTC 514746 Query 121162 CACATGCA 121169 || ||||| Sbjct 514747 CAGATGCA 514754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420582460640