Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq28 295 6e-75 >seq28 Length=1168530 Score = 295 bits (326), Expect = 6e-75 Identities = 965/1456 (66%), Gaps = 49/1456 (3%) Strand=Plus/Minus Query 146887 TACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTG 146946 |||| || || || | |||||||| ||||||||| | || || | || ||| Sbjct 331879 TACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTG 331820 Query 146947 AAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTAC 147006 || ||||| || |||| |||||||| | || || | |||| ||||| |||||| Sbjct 331819 AAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGG 331760 Query 147007 GCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGTTTGCCA 147065 || |||| || || || |||| || | ||| | || ||||| | | ||| Sbjct 331759 GCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATC-ACCTTCTCCTTGAGGCTGGCCCA 331701 Query 147066 GTCCCAC--ATCGACGA-GGGCGTCACGTTC---CACATGTCGTACTGGAGCACTCC-TC 147118 |||||| | || | |||| | ||||| ||||||||| |||| || | || || Sbjct 331700 GTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCCTC 331641 Query 147119 GACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC 147178 | ||||| || ||||| | ||| || ||| || || || ||||| || || | Sbjct 331640 G-CTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATC 331583 Query 147179 TT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGT-CGC 147236 | ||||| || || |||| || |||||| ||| | | ||| | || | ||| Sbjct 331582 GACGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCACC-CGCTGCGC 331524 Query 147237 TTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACC 147296 || | | | |||| |||| || | ||||| || || | ||||| | || Sbjct 331523 CTCCGCCGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCC 331464 Query 147297 GACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGT 147355 || |||||| || || | || | ||| ||||| ||| || | | || |||| || Sbjct 331463 GAGGCCGATGGGGCGGTTGCGCAT-GTTACTGCGGCGCGCCGTCTCGACCGGGTAGTAGT 331405 Query 147356 TGCGATCAATAATCTTGTTGAGGTTACGCACTA-CAACTTTAGTTATTGTTTTGAGTTTC 147414 |||| ||||||| | ||| |||||||| | | |||| || | || | ||| | Sbjct 331404 TGCGGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTT-GTCACGGTGTAGAGAAGC 331346 Query 147415 TCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTGGTTCACGGCGATAGACGCCA 147472 | | | || || || |||| |||| ||| | | || ||||| || || | Sbjct 331345 TGGTGGTTG-AACTCACG-CTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGA 331288 Query 147473 GATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTG 147531 | ||||| || |||||||| | |||| || |||||| || || || | ||| ||||| Sbjct 331287 GGTTGCACACCGCCGTCTCCTGTGGCGACG-TGTACTCGACAATCTCCGTGCATAGGTTC 331229 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 ||| || || || | ||| | ||| || || | ||||| ||||| ||| || Sbjct 331228 GAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAG 331169 Query 147592 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA--AACCTATGCAGGTCCT 147649 || | | |||| || || ||||||| || | || | |||| || | | || |||| Sbjct 331168 AGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA--CACCTCCT 331111 Query 147650 GCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 | || | | | || | || |||||||||| ||||| |||||||| | ||||||| Sbjct 331110 GGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCA 331052 Query 147709 AACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGACACATCAGCGACCA 147767 ||||| || || ||||||||| || || || ||| || || ||| |||||||| ||| Sbjct 331051 AACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTG-GGATCCATCAGCGTCCA 330993 Query 147768 CATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | | | || || || |||| |||||||||||| || | |||||||||||| | || Sbjct 330992 CTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAG 330933 Query 147828 ATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAG 147885 |||| |||| || || || ||| |||||||||||| || | || | || Sbjct 330932 GTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAG 330875 Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCC 147942 | ||| ||||||||||| || | |||||||| | || || || ||||| |||||| Sbjct 330874 ACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 330815 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 ||||| || | ||| | ||||||| || ||||| | ||| || | || ||| ||| Sbjct 330814 TGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGAC 330755 Query 148003 GTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCA 148062 |||||||| || | || | |||||| || || | | |||||||| | ||| Sbjct 330754 GTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCA 330695 Query 148063 ATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 |||||||| |||| ||||| | || | || || || || || ||||||||||| Sbjct 330694 ATGCCGCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGT 330637 Query 148121 CGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 |||||||||| | || |||||| | || || ||||| | ||||||||| || | || Sbjct 330636 CGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTG 330578 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTCATCATGCGAT 148237 || || || ||||| || | ||||| || || || || || ||| | | | Sbjct 330577 CCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGA--CATAAGGTCGT 330520 Query 148238 ACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 |||||||| | | | || || ||||||||||||| || ||||| ||||||| || Sbjct 330519 ACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGACACGCATGAACA 330460 Query 148298 TGTGCTGTGGTCGTTC 148313 | |||||||| || || Sbjct 330459 TCTGCTGTGGGCGCTC 330444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610985524960