Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq28 138 1e-27 >seq28 Length=1168530 Score = 138 bits (152), Expect = 1e-27 Identities = 888/1400 (63%), Gaps = 37/1400 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| | ||||||||||| || || | || ||||| || | ||| | | ||| Sbjct 330449 CCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGT 330508 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 330509 GCGTGAGACGTACGACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTT 330568 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || |||||| | |||||||| | || ||||| || Sbjct 330569 TAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGA 330628 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC-TCAAAGTGGGCTG 104459 | ||| |||| ||||| | || || | ||||||||| ||| ||||| ||| | Sbjct 330629 CAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAG-CGGCCG 330687 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGTATTCGGGGGACA 104518 | || ||||| ||||| | || | | | || | || || || || Sbjct 330688 GCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGCT-ACATAGCTGGTACG 330746 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 330747 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 330806 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | || || || ||||| | |||| |||||||| ||||| |||||| Sbjct 330807 GTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCAC 330866 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || || | | || || | || | |||| || | || || ||| | Sbjct 330867 GCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 330926 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG- 104754 ||||| ||||||| ||| || ||||| |||||||| || ||| ||| ||| || | Sbjct 330927 CGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATG-AGACGTGTGAAAAGCGA 330985 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || || ||| | || | ||| ||| | || |||||| |||| | ||||| Sbjct 330986 GGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGA 331045 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGGTGC 104873 |||||||| || ||| |||||| || || || |||| | |||| | | Sbjct 331046 AGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-C 331103 Query 104874 CAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 ||| ||| || |||||| ||||| || ||||||| | |||||| || || | Sbjct 331104 CAG--GCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGT 331161 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 | | || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 331162 TCGTCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCA 331221 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC--AGACAAAGATGAGACGGCTGT 105048 || | || || || || || || || | || | || | || || |||||||| || Sbjct 331222 AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAG--GAGACGGCGGT 331279 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTG 105107 ||| |||||||| || ||||| || || | || || |||| | | | || Sbjct 331280 GTGCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGACGTTGAGA-AGCGTGAGTTCA 331338 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTG-TCACCAAAAACCTAAACAGAGTTATT 105166 | | | ||| || || || ||| | | |||| ||||||||| | |||||| Sbjct 331339 ACCACCAGCTTCTCTACACCGTGAC-AAAGCAGATCACACGTAACCTAAACCGGGTTATT 331397 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 || | || | ||||| || ||||| || || ||| ||| | |||| || || Sbjct 331398 GACCGCAACTACTACCCGGTCGAGACGGCGCGCCGCAGTAACATGCGCAACCGCCCCATC 331457 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 || ||||| || ||||| |||||||| | ||||| || || | | |||| || Sbjct 331458 GGCCTCGGCGTGCAGGGGCTCGCGGACGCCTTCATCCTCATGCGACTGCCGTTTGTCTCG 331517 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 | || ||| || | || || || || || || || || || ||| | ||| Sbjct 331518 GCGGAGGCGCAGCGGGTGAACGCAGAGATCTTCGAAACGATCTACTTTGCTGCTGTCGAG 331577 Query 105347 GCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || ||| |||| ||| ||||| || || || ||||| ||| || || Sbjct 331578 TCGTCGATGGAGCTGGCGAAGGAGGATGGCCCGTACGAGACCTTCACGGGCAGCCCGGC- 331636 Query 105407 TCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGC----TTCACT 105458 || | |||| | || || || || |||||| ||| | | | || | | || || Sbjct 331637 -CAGCGAGGGCATTCTGCAGTTCGACATGTGGAAGAACGCGCGGCCCAACAGCGGTCGCT 331695 Query 105459 ACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 ||||||| ||| |||||||| | | | || ||| | || ||| || || Sbjct 331696 GGGACTGGGCCAGC-CTCAAGGAGAAGGTGATGCAGGTGGGCATGCGCAACTCCCTGCTG 331754 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | || || |||||||| || |||||| | || || | || ||||| || ||||| || Sbjct 331755 GTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAATAACGAGTGCTTCGAG 331814 Query 105578 CCCTACACGACGAACATCTA 105597 |||| ||| |||||||||| Sbjct 331815 CCCTTCACCTCGAACATCTA 331834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260537532640