Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq28 387 2e-102 seq22 82.4 8e-11 >seq28 Length=1168530 Score = 387 bits (428), Expect = 2e-102 Identities = 1167/1761 (66%), Gaps = 72/1761 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACC--CTTCTTCCATCCGTACAGGTGCATAC 78247 || |||| ||||| | ||| ||||| || || |||| ||| | || | | |||| Sbjct 332182 GTGCGCAGGTAGTAGACGCCAGTCTTCAGTCCAGCTTC--CCAGCAATAGAAGAGCATGG 332125 Query 78248 TCGACAGCTTGGCCAGAC-TCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 || | || |||| || | ||| ||| | ||||| ||| |||||||| |||||||| Sbjct 332124 ACGTGATCT-GGCCGGAGGTGGGGCTCTGGAGGAAGAGGTTCAGCGACTGCGACTGGTCA 332066 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 |||||| ||||||||| |||||||| || | | || ||||||||||| | | Sbjct 332065 ATGTACTGGCCGCGGTCGCGTGCCATGTCTATCAGCTTGCGCTGTGGAATCTCCCACACG 332006 Query 78367 GTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGT-ACGCTCCCACCGGC 78425 |||||||||| || |||| || ||| | ||| || | || | | | ||| Sbjct 332005 GTCCGGTAAAGCTCCCTCAGGTCGTCCGGCATG-CCGTTAATAGTGAGGATAGAGCCGTT 331947 Query 78426 -TCGCACA--ATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCG 78482 | | | | || || ||| || |||||| || | ||| ||| Sbjct 331946 GTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCATAGACCACGCGCAATAAGGTCCAT 331887 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 ||| |||| | ||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 331886 GACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTT 331827 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | ||| | |||||||| |||||| || || | ||||| | ||| || ||||| || Sbjct 331826 CGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGG 331767 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAA-GACCA--TGCGTCTTGATCTCGACCTTTAG 78659 |||||| || ||||| || || || || | | ||| ||| || |||| ||| || Sbjct 331766 CATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTC---CTTGAG 331710 Query 78660 GCCGTCCCAAAATT--CATTCGC----------CGCGATCCCCCACATGTCCGGTTGAAG 78707 || | |||| | ||| |||| || ||||||||| || || Sbjct 331709 GCTGGCCCAGTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAG 331650 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 || |||||| ||||| ||| |||| |||||||| | || |||||||| || || Sbjct 331649 AATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAG 331590 Query 78768 TTCGCAT----GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGA 78823 || ||| ||||||| ||| | || ||| | | |||||||| | ||| | Sbjct 331589 CTC-CATCGACGACTCGA-CAG--CAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCA 331534 Query 78824 GCTCGC-GCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGG 78882 | ||| |||||| | | | | |||| || | | | |||||| | || || || Sbjct 331533 CC-CGCTGCGCCTCCGCCGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGC 331475 Query 78883 CCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC 78942 ||||| ||||||| |||| || |||| ||||||||| || || |||| |||| | Sbjct 331474 CCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACC 331415 Query 78943 GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCG 79002 ||||| |||| || || || || ||||| |||||||| |||| | ||||| | Sbjct 331414 GGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTTGTCACGGTG 331355 Query 79003 TACA--ATTTGGCG----AAATCAAAATGATTTCCTTTGATGAAAGTCGGTAGGCACAGC 79056 || | | ||| | || ||| | | | | || ||| ||| || | Sbjct 331354 TAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATG 331295 Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || || ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 331294 GAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCAT 331235 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || ||||||| ||||| | ||||||||||| ||| ||| || |||||| Sbjct 331234 AGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCC 331175 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 |||||| | | ||||| || ||||| | |||| || || | | ||| | Sbjct 331174 TTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCACACC 331115 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTAC----CGACCCTGTGCGACGTACGTCCGGTACAA 79292 ||| ||||| ||| | ||||| || || |||| | |||| | ||| | Sbjct 331114 TCCTGGGCCTGGAT---CGTCTTG-ACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAG 331059 Query 79293 CTCGTTGAAAGCCTCC-CCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 | || | ||| || | |||||| |||| || ||||||||| || || ||||| Sbjct 331058 C-CGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCA 331000 Query 79352 GGTGCCAGTCCTCGTC-CTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 | ||| | | | || ||| ||| | |||| || || || || ||||||||||| || Sbjct 330999 GCGTCCACTTCCCCTCGCTTTTCACACGTCTC-ATAAACAGATCTGGGATCCACAGCGCG 330941 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||||||||||||| ||| || || | ||| ||| | |||| |||||| Sbjct 330940 TAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAG 330881 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 | | || ||| |||||||| ||||| ||||||| |||||| | ||||||||||| ||| Sbjct 330880 CCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCG 330821 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 |||||||||| ||||| ||||| ||||||||||| || || ||||| ||||||| ||| Sbjct 330820 CCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCG 330761 Query 79591 -TCGGCGACGCCGTTCGT-CCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-G 79647 ||| || ||||||||| || | | | | |||| ||| || ||||| | ||| | Sbjct 330760 TTCGACG-TGCCGTTCGTACCAGCTATGTAGCTGCCCGC-CGCGCGGATGTT-GTGCACG 330704 Query 79648 TGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707 || | || ||||| |||| | ||| ||| || |||||||| ||||| |||||| Sbjct 330703 TGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAG 330644 Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC---AGCTCGACATCTGTGGG 79764 ||||| ||||| ||| |||||| || |||||||||| |||| ||| || || Sbjct 330643 ATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT---CATTTGCGGC 330587 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA-CTTTTGGCTCAT 79823 || || |||||||| ||||||||||| || ||||| |||||||| | |||| ||| Sbjct 330586 TTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG-ACAT 330528 Query 79824 CAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCG 79883 || ||||||||||| || | ||| || ||||||| ||||| | ||||| || Sbjct 330527 AAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGACACG 330468 Query 79884 CATGAAGAGGTACTG-GGGCG 79903 |||||| | | ||| ||||| Sbjct 330467 CATGAACATCTGCTGTGGGCG 330447 Score = 311 bits (344), Expect = 1e-79 Identities = 943/1438 (66%), Gaps = 44/1438 (3%) Strand=Plus/Plus Query 19115 TTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATAC 19174 |||||||| ||||| | ||||| || |||| || ||| | || || ||||| ||| Sbjct 330462 TTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGTGCGTGAGACGTAC 330521 Query 19175 GACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 ||||| ||| | || |||||||| ||||| || |||||||| || |||||||| || Sbjct 330522 GACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCACC 330581 Query 19235 AACAACCCGCAGATGTCGAGCT---GTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || ||||| ||| |||| | ||||| ||||| |||||| |||||||| || Sbjct 330582 CCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGACAGCATCGAC 330638 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||||||||| ||||| |||||||| || ||| ||| | |||| || || || Sbjct 330639 GGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAGCGGCCGGCGGCATTGGT 330698 Query 19352 ATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 | ||| ||| | || ||||| || || | || ||| |||||||| | Sbjct 330699 CTGCACGTGCAC-AACATCCGCGCGGCGGGCAGCTACATAGCTGGTACGAACGGCACGTC 330757 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 |||| |||| |||||||| ||||||||||||||||| ||| | ||||| ||||||| Sbjct 330758 GAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACCAGGG 330817 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 ||||| || ||||||||| | |||||| |||| |||||||| |||||||| |||||| | Sbjct 330818 CGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCACGCTGACGTCTT 330877 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 | || || ||| | ||| ||| | || || |||| ||||||||||| Sbjct 330878 TGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGCGACCTCTT 330937 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG-GACGAAGAATGGC 19649 | || ||||||| || || || || || |||| | ||| ||| || | | ||| Sbjct 330938 CTACGCGCTGTGGATCCCAGATCTGTTTAT-GAGACGTGTGAAAAGCGAGGGGAAGTGGA 330996 Query 19650 ACCTGATG--TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAA 19707 |||||| | || |||| ||||| || || ||| ||| || || | ||| | Sbjct 330997 CGCTGATGGATCCCAACACG--TGCCCGGGTCTCAGCGATTGCTATGGTGAAGAGTTTGA 331054 Query 19708 TGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGA 19767 | | ||| | |||| || ||||||| | ||| | ||| ||||| ||| Sbjct 331055 GCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCCAGGCCCAGGA 331114 Query 19768 CGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAA 19827 || ||| |||| | ||| ||||||| || |||| | | |||||| Sbjct 331115 GGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCGTCCTCTACAA 331174 Query 19828 GGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCT 19887 |||||| ||| |||||| || |||||||| | ||| ||||||||| || ||||| Sbjct 331175 GGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCAAGTGCTCGAACCT 331234 Query 19888 GTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTC 19947 || || || || | ||| | ||| | ||||| || ||||| || || || || Sbjct 331235 ATGCACGGAGATTGTCGAGTACACGTCGCCACAGGAGACGGCGGTGTGCAACCTCGCCTC 331294 Query 19948 CCTGTGCCTGCCGACTTTCGTCAA-----GGCCTCCT-CCTTCGACTTTGCCAAAT--TG 19999 | | |||||| |||||| | | | | ||| || ||| | | Sbjct 331295 CATCGCGCTGCCGCGCTTCGTCGACGTTGAGAAGCGTGAGTTCAAC--CACCAGCTTCTC 331352 Query 20000 TACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTAC 20059 ||| ||||| | |||| ||||| || || || || || || || |||| ||| Sbjct 331353 TACACCGTGACAAAGCAGATCACACGTAACCTAAACCGGGTTATTGACCGCAACTACTAC 331412 Query 20060 CCGACCGAGGCGGCGCGC--AAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCC 20117 ||| |||| |||||||| ||| || |||||| |||| || |||| ||||||| | Sbjct 331413 CCGGTCGAGACGGCGCGCCGCAGT--AACATGCGCAACCGCCCCATCGGCCTCGGCGTGC 331470 Query 20118 AGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGC-GC 20176 |||| || || |||| ||||| | | | || | || | | | |||||| || Sbjct 331471 AGGGGCTCGCGGACGCCTTCATCCTCATGCGACTGCCGTTTGTCTCGGCGGAGGCGCAGC 331530 Query 20177 GAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAA 20236 | | | ||| | |||||||| | | ||| || || || | ||| || Sbjct 331531 G-GGTGAACGCAGAGATCTTCGAAACGATCTACTTTGCTGCTGTCGAGTCGTCGATGGAG 331589 Query 20237 CTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATC 20296 || || || ||||| |||||||||||||| |||| ||| || || |||||| || Sbjct 331590 CTGGCGAAGGAGGATGGCCCGTACGAGACCTTCACGGGCAGCCCGGCCAGCGAGGGCATT 331649 Query 20297 CTCCAGCCGGACATGTGG----------GGCGTCACTGAGAATG--AGTTTTGGAGCGCC 20344 || ||| ||||||||| ||| || | | | | ||| | | Sbjct 331650 CTGCAGTTCGACATGTGGAAGAACGCGCGGCCCAACAGCGGTCGCTGGGACTGGGCCAGC 331709 Query 20345 CTCAAGGTTGAGATCAAGACCCACGGGC-TTCGCAACTCGTTGCTCGTCGCGCCCATGCC 20403 ||||||| || | | | | |||| | |||||||| |||| || || |||||||| Sbjct 331710 CTCAAGGAGAAGGTGATG-CAGGTGGGCATGCGCAACTCCCTGCTGGTTGCCCCCATGCC 331768 Query 20404 GACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAA 20463 ||||| || ||| | ||||| | || || |||||| |||||||| | ||| | || Sbjct 331769 AACCGCGTCCACCTCGCAGATTCTCGGCAATAACGAGTGCTTCGAGCCCTTCACCTCGAA 331828 Query 20464 CATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTC 20521 ||||||| | || ||| ||| ||| |||||| | || |||||| |||| ||| Sbjct 331829 CATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTCCCTGTTGTGAACAAGTACCTCGTC 331886 >seq22 Length=675415 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/216 (70%), Gaps = 14/216 (6%) Strand=Plus/Minus Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCA-TGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| ||||||||||| || ||||| || ||| || || || ||| |||| |||| Sbjct 513247 GAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGG-CTGATTGGCATGAACGC-GGAGC 513190 Query 60269 A-ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAGTTTGGAGA 60322 ||| |||||||||| |||| ||||||||||| || || || | | ||||| Sbjct 513189 TGATGGCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGA 513130 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 || || ||| || || | || ||||||| ||||||| |||||| || | || Sbjct 513129 AGCAC-----TACCGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGG 513075 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || || |||||||| |||||| ||| ||||| || Sbjct 513074 CAAAACGAACTTCTTCGAGAAGAAGGTGGGGGAGTA 513039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524553163840