Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 194 2e-44 seq15 104 3e-17 >seq28 Length=1168530 Score = 194 bits (214), Expect = 2e-44 Identities = 796/1233 (65%), Gaps = 34/1233 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||||| |||||||| ||||| |||| ||| ||||||||||| Sbjct 331667 CCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGG 331608 Query 80601 GCCCTCCGTCTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657 ||| ||| ||| |||||||| ||||||| | | || || || || || Sbjct 331607 GCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACA---GCAGCAAAGTAGATCGTTTC 331551 Query 80658 AAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 |||| | |||||| |||| |||||| | | | |||| || | ||| | | Sbjct 331550 GAAGATCTCTGCGTTCAC-CCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGCATGAGGA 331492 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 |||| |||| || || ||||| ||||||| | |||| ||||||| |||| |||| | Sbjct 331491 TGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGC 331432 Query 80777 G-CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 | | || | || || ||||| |||| || || || ||||| ||||| ||||| Sbjct 331431 GGCGCGCCGTCTCGACC-GGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGTTACGTGTG 331373 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT---GGTTCCC--CTTC-ACA 80889 | | ||| || | || ||| || ||| | | ||| | | || || Sbjct 331372 ATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAACGTCGACG 331313 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 || ||| || | ||| || || |||||||| ||| ||| | | || || Sbjct 331312 AAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTAC 331253 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| || |||||||| | || || |||| || || || || || |||||||| ||| Sbjct 331252 TCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGAC 331193 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| |||||| |||||||||||| | | |||| || ||||||| ||| |||| Sbjct 331192 TTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCC 331133 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| || ||| | ||| | |||| || | |||| | ||| |||| | | Sbjct 331132 AGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCG 331073 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| ||| | || |||| |||| | || |||| | |||||| Sbjct 331072 TAGCGCTCGTAGAGCCGC-TCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGT 331014 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||| || |||||| ||| | ||| | | ||| |||| || || || Sbjct 331013 GTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGG 330954 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 |||||| || ||| ||| ||||||||| |||| || || | ||| |||| | Sbjct 330953 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330894 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || | |||||| | | || ||| || ||||| ||||| ||||| ||||||| | || Sbjct 330893 CAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCC 330834 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 |||||| || ||| ||||||| ||||| ||||| || ||| || || || | ||| Sbjct 330833 CTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCAT 330774 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | || || | ||| ||||||||||| | || ||| ||||| | Sbjct 330773 TGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGAT 330714 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTG-AAATCTGAGCACACCGGTTCA 81544 ||| | ||||| ||||| || | || ||||| ||| |||||| |||| Sbjct 330713 GTTGTGCACGTGCAGACCAATGCCGCC-GGCCGCTTTGCTGATCACGGCACACTCCTTCA 330655 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTG 81601 || || || || || |||||||| |||| ||| | | || || ||| | |||| Sbjct 330654 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT-- 330597 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 ||| || || | | |||||| || || || || ||||| ||||| |||| | | Sbjct 330596 -CATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330538 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC--GCGTGGAATATCGTCACCGTGAATACC 81719 || ||||| ||||| || || || || | || | ||| | |||||||| || Sbjct 330537 CCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTG--AGATCTGCGCCGTGAATGCC 330480 Query 81720 GATAGCTACACGCATAAACATGTACTG-GGGCG 81751 | ||| |||||||| ||||| | ||| ||||| Sbjct 330479 AAGAGCGACACGCATGAACATCTGCTGTGGGCG 330447 Score = 131 bits (144), Expect = 2e-25 Identities = 291/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||||| ||||||||| | | | | ||||| ||||| ||| || | Sbjct 904531 GACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAAGCGCAACTTGGTG 904590 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||| ||||||| |||||| | |||||||| | ||||| | || || ||||| Sbjct 904591 AACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTCCGCATACCACCAT 904650 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 |||||| |||||| | || || ||| | || ||| ||||||| || || Sbjct 904651 GGCGAGCAGTCGCTTGTGCAGACGATCGTCGGAATGGCGCAGGACTTTGTGGGCAGCAAC 904710 Query 32164 AACCTGAACTTACTCGAGCCATC-TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | | || | || | ||| ||||| || || || || |||||||||||| Sbjct 904711 AACGTCCCGCTGCT-GCGCAAGGATGGCCAGTTCGGTACGCGTCTGCACGGTGGCAAGGA 904769 Query 32223 T---GCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATT 32277 || ||| || || |||||||||||||| ||| ||| | || || || Sbjct 904770 CCACGCCGCGGGC---CGCTACATCTTCACCCGGCTCATGCAGGTCTCCCGGGC--CATC 904824 Query 32278 TTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAG 32337 ||| ||||| | |||||| ||| || ||||||| || ||||||| ||| ||| Sbjct 904825 TTCCACCCGGCCGACGATTTTGTGGTCGAGTACAAGGACGACGACGGTCTCTCGGTGGAG 904884 Query 32338 CCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGA 32397 || | ||||||| |||||| | |||||| | |||||||||| | |||||||| Sbjct 904885 CCTTTCTTCTACATTCCGGTCATCCCGATGGTGCTGGTGAACGGCACGACGGGCATCGGC 904944 Query 32398 ACGGGGTTCAG 32408 || |||||||| Sbjct 904945 ACCGGGTTCAG 904955 >seq15 Length=620739 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||| Sbjct 526329 GAAGGTGGCGCAGCTGTCGGGCTACATCTCAGAGGCGTCGGCGTTTCACCACGGCGAGGC 526270 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| ||| | || ||| | || Sbjct 526269 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACCGGCGGCAACAACATCAA 526210 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 526209 CCTGCTCGTGCCAGAGGGTCAGTTCGG 526183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310143360320