Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq28 104 5e-17 seq22 93.3 9e-14 seq15 93.3 9e-14 >seq28 Length=1168530 Score = 104 bits (114), Expect = 5e-17 Identities = 231/341 (68%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||||| ||||| | ||| | || | |||||||||||||| ||||| | || ||| ||||| Sbjct 904796 GTGAAGATGTAGC-GGCCCGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 904738 Query 273839 ---ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 | ||| | |||| ||| | | ||||||||| || || | ||||| ||||| Sbjct 904737 GCCATCCTTGCGCAGCAGCGGG---ACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCC 904681 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| ||| | ||| || |||||| ||||| || ||| ||| || | || || Sbjct 904680 GACGATCGTCTGCACAAGCGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTA 904621 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 || | ||| | ||||| | | || |||||| |||||||| ||| ||| Sbjct 904620 GCCGGCAAGCTGCACCACCTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAG 904561 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATC 274075 | ||| ||||| ||||||||| || |||| || || || ||||| || | || Sbjct 904560 GATCTTGCGCTGGCCGGGCTTGAAGCCGTCAATCACGCTCGGGATGCTGCGCTCGCAGTC 904501 Query 274076 ATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||| ||||| | |||||| |||||||| | ||||| Sbjct 904500 --GGCGATGGAGAAGAGAATCAGCTCCTTGTCCACAAAGTC 904462 >seq22 Length=675415 Score = 93.3 bits (102), Expect = 9e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || || |||||||| || || || |||| | Sbjct 513241 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 513182 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| || | ||||| || Sbjct 513181 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 513122 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| ||||| |||||| Sbjct 513121 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 513062 Query 230373 TTCGAAAAG 230381 ||||| ||| Sbjct 513061 TTCGAGAAG 513053 >seq15 Length=620739 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || |||||||||||||| | | || ||||| || || ||| | | || || Sbjct 526126 AGCTTCGTGAAAATGTAGCGCGGGGCGGCGTGGTCGTTACCGAGCTGCTGTCGAGAGCCG 526185 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||||||||| |||| ||| ||| |||||||||| ||| | | | ||| ||||| Sbjct 526186 AACTGACCCTCTGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATC 526245 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGA 273932 |||||||| ||| |||| || || |||||||||||||| Sbjct 526246 TTCACGATGGTCTCCTGCAGCGAGGCCTCGCCGTGGTGA 526284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738717191544