Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22 194 2e-44 seq36 93.3 4e-14 seq9 91.5 2e-13 seq8 87.8 2e-12 >seq22 Length=658755 Score = 194 bits (214), Expect = 2e-44 Identities = 229/305 (75%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| | ||| | ||| | ||||| || || |||| ||| Sbjct 498192 GAGCCGCTGCAGCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 498133 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 498132 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 498073 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | ||| ||||||| ||||| || ||||||||||| Sbjct 498072 GGCAACGACATGAAGGACTGGGCAATGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 498014 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 498013 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 497954 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 497953 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 497895 Query 116874 AGAAC 116878 ||||| Sbjct 497894 AGAAC 497890 >seq36 Length=2743999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 ||| ||||| |||||||| || | ||||| ||| ||||||||||||||||||||| | Sbjct 1417086 CGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTC 1417027 Query 40884 CACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || ||| ||||| || | |||||| Sbjct 1417026 CACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1416993 >seq9 Length=594373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 375436 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 375377 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 375376 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 375318 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| Sbjct 375317 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTC 375269 >seq8 Length=502718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTG---CCCTACTGG 73637 || ||||||| ||||||||| ||||| ||| | ||| ||| | | || |||||| Sbjct 413630 CTGAACCACGGCGTGCTGCTCGTCGGGTACAACA---AGACCGGTGRGGTTCCGTACTGG 413574 Query 73638 GTGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 ||| |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 413573 GTGATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 413521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218968151360