Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq28 199 1e-45 >seq28 Length=1168597 Score = 199 bits (220), Expect = 1e-45 Identities = 582/885 (66%), Gaps = 30/885 (3%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || ||||| ||||| ||||| |||||||| ||| |||| || || || | ||| Sbjct 330434 ATTGTGGAGCGCCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGAT 330493 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCT----AAGTGCTCGTGTATTCACGCACGC 363557 | | | | ||| || || | ||| | ||| ||| | ||||| ||||| Sbjct 330494 CTCAAGAATGTGCGTGAGACGTACGACCTTATGTCCAAGGGCT----TCTTCACCCACGC 330549 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | || || || || | || || || ||| || ||||| || | Sbjct 330550 CACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGT 330609 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 |||||| || |||||| || |||| ||||| || ||| | ||||| | || Sbjct 330610 GGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGAT 330669 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTA 363737 ||| || ||||| |||||| | | ||||| | || || | ||| || Sbjct 330670 CAGCAAAGCGGCCGGCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGCTA 330729 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| || || || ||||| ||||| || || ||||| || || || |||| Sbjct 330730 CATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAA 330789 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 || || | ||||| |||||||| || || |||||||| || || || || | ||||| Sbjct 330790 CACCGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCT 330849 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGGGAAA 363914 |||||| || || || | |||| ||||| ||| | |||| ||||||||||| Sbjct 330850 CGAGCCCTGGCACGCTGACGTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAA 330906 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || ||| || || || || ||||| || || ||| | | || | ||||||| Sbjct 330907 AGATGACCAGCGCGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAG 330966 Query 363975 GCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTT--TTGCCCACACGAATGTCCAGGTC 364030 || ||| || ||| ||| ||| | || | | || ||||| || || |||| Sbjct 330967 ACGTGTGAAAAGCGAGG--GGAAGTGGACGCTGATGGATCCCAACACG--TGCCCGGGTC 331022 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | |||| | ||||| || | || || ||||| || || || ||||| Sbjct 331023 TCAGCGATTGCTATGGTGAAGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGG-C 331081 Query 364091 AGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 | ||| ||||| || | || ||| || | |||||||| ||| |||| || ||||| Sbjct 331082 CGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATC 331141 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 ||||| ||| || | | | ||||| || | |||||| ||||||| |||||| || Sbjct 331142 GAGACGGGAGGGCCGTTCGTCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAG 331201 Query 364210 CACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCGCT 364266 | ||||| || | ||| || || |||||||| || |||||| | || ||||| | Sbjct 331202 AATCTTGGCACGA-TCA--AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCG 331258 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 || | ||||| || || || ||||| || || |||||||| ||| Sbjct 331259 CCACAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCGCTGCCG 331303 Score = 86.0 bits (94), Expect = 2e-11 Identities = 279/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||||||||||| | || |||||||| || || || || | ||||| ||||| || Sbjct 331736 CGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAAT 331795 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || ||||| || || ||| || Sbjct 331796 AACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAG 331855 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || || || || || |||||||| |||| ||| ||| | || || || ||| || Sbjct 331856 TTCCCTGTTGTGAACAAGTACCTCGTCATGGACCTTATTGCGCGTGGTCTATGGAACGAG 331915 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||| |||| | |||||| || || || ||| | | | ||| || | || Sbjct 331916 TCGATGCGGAACGAGATCATCTCCTACAACGGCTCTATCCTCACTATTAACGGCATGCCG 331975 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGAT 365031 || || |||| | ||||| ||||| ||||| ||| | ||| | || || || Sbjct 331976 GACGACCTGAGGGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGAC 332035 Query 365032 ATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||||| ||| |||| || | || | | ||| |||||| | ||| | ||| | Sbjct 332036 ATGGCACGCGACCGCGGCCAGTACATTGACCAGTC----GCAGTCGCTGAACCTCTTCCT 332091 Query 365088 GACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | || || ||||||| | || | || ||||||| ||||| | ||| || | || | Sbjct 332092 -CCAGAGCCCCACCTCCGGCCAGATCACGTCCATGCTCTTCTATTGCTGGGAAGCTGGAC 332150 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 332151 TGAAGACTGG 332160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352998828152