Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq28 289 3e-73 seq9 84.2 2e-11 >seq28 Length=1168597 Score = 289 bits (320), Expect = 3e-73 Identities = 950/1452 (65%), Gaps = 37/1452 (3%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || || | ||||||||| || |||||| || | || | ||| || || Sbjct 331876 GTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGT 331817 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 |||||| || || ||||||||||||| || || || | ||| | ||||| |||||| Sbjct 331816 GAAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGG 331757 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || |||| | || ||||||| ||| || | | | | ||||| || | |||| Sbjct 331756 GGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCA 331697 Query 145231 ATCCCATAG--CGAAGTCGG-CCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || || || | ||| | ||||||||| |||||| ||||||||| Sbjct 331696 GTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCCTC 331637 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACT 145344 |||||| |||||||| |||| ||| ||| || || ||||| || | Sbjct 331636 GCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCG 331578 Query 145345 -CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| | ||| | || || || || ||| || | ||| | | || ||| | Sbjct 331577 ACGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCT 331518 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | | |||||| |||| || | || || || ||||||||||| | || | Sbjct 331517 CCGCCGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGA 331458 Query 145464 CGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTAC 145523 ||||||||| || | |||||| || | ||||| ||||| || || || | Sbjct 331457 GGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGC 331398 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTT 145580 |||| |||| || | ||| || | |||||| | ||| | | || | Sbjct 331397 GGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGT 331338 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 || ||| | || |||||| | || ||| | ||||| || || | | Sbjct 331337 G---GTTGAACTCACGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAGGT 331281 Query 145641 TACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | || || |||||||||| |||| || |||| | || ||||| | ||| | || Sbjct 331280 TGCACACCGCCGTCTCCTGTGGCGACG-TGTACTCGACAATCTCCGTGCATAGGTTCGAG 331222 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 || ||||| || || ||||| | ||| || || |||||||| |||||||||||||| Sbjct 331221 CACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGG 331162 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCG 145817 | | |||| || || ||||| | ||| | ||||| |||| |||| || ||||| | Sbjct 331161 ACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA--CACCTCCTGGG 331104 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 | | | | || | ||||||||| ||||| | ||||||| ||||||| Sbjct 331103 CCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACT 331044 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | ||| ||||||||| || || || ||| |||||||| |||||||| ||| | Sbjct 331043 CTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCC 330984 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC 145997 | | | || || || |||||||| |||||| | |||||||||||| | | ||||| Sbjct 330983 CCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGC 330924 Query 145998 --GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTC 146055 |||| || || || ||| |||| || |||| || | | | ||| ||| Sbjct 330923 GGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTC 330866 Query 146056 CGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTC 146112 |||||||| || || | ||||||||||| ||| || || || || ||| |||||||| Sbjct 330865 AGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTC 330806 Query 146113 CACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCC 146172 ||||| || | ||||||| |||||||| | ||| ||| ||| ||| | | ||| Sbjct 330805 CACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCC 330746 Query 146173 GTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 ||||||| ||| | |||| | ||| | | || || | || || | || Sbjct 330745 GTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATGCC 330686 Query 146233 GCC-GCCGTACTTGGAT-ATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG 146290 ||| |||| ||| | | || |||| || || ||||| |||||||||||||| ||| Sbjct 330685 GCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATG 330628 Query 146291 CTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCG 146348 || || ||||| | ||| | ||| |||||||||| ||| |||| | |||| || || | Sbjct 330627 CTGTCTTCCTTCG-ACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGG 330570 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTT 146408 | || | |||||| | ||||| || || | | ||| | ||||| | Sbjct 330569 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAGGTCGTACGTCT 330510 Query 146409 C-GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGT 146467 | | ||||| | || |||| |||||||| | |||||| ||||||| ||| || Sbjct 330509 CACGCACATTCTTG-AGATCTGCGCCGTGAATGCCAAGAGCGACACGCATGAACATCTGC 330451 Query 146468 TGGGGCCGCTCC 146479 || || |||||| Sbjct 330450 TGTGGGCGCTCC 330439 >seq9 Length=594373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | |||||||||||||| ||||| || || ||| Sbjct 375282 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 375341 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | ||| | || ||| | | ||| | || | | | Sbjct 375342 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 375401 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || ||||| || || || ||||| ||||||||| Sbjct 375402 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 375437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012587594240