Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 3e-13 seq22 86.0 1e-11 >seq28 Length=1168597 Score = 91.5 bits (100), Expect = 3e-13 Identities = 213/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 904556 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 904611 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 904612 CCCGAGCGTGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 904671 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || | || || || || || || Sbjct 904672 GCGCAACTTGGTGAACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTC 904731 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| || || ||||| | | ||||| | || || || ||||| ||||| Sbjct 904732 CGCATACCACCATGGCGAGCAGTCGCTTGTGCAG---ACGATCGTCGGAATGGCGCAGGA 904788 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | | |||||| | || | || ||||| ||| | || Sbjct 904789 CTTTGTGGGCAGCAACAACGT---CCCGCTGCTGCGCAAGGATGGCCAGTTCGGTACGCG 904845 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 904846 TCTGCACGGTGGCAAGGA 904863 >seq22 Length=658755 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 |||| ||||| || || ||||| |||||||| || |||||| |||| | | ||||||| Sbjct 497963 GCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATG 498022 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGA 252330 ||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 498023 AAGTGCCGCTCCCCGTCGTTCAGCATTGC---CCAGTCCTTCATGTCGTTGCCCAGGTCG 498079 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCAGG 252389 | || ||||||||||||| | | || || ||||||| ||||| | | ||| | Sbjct 498080 ATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCATG 498138 Query 252390 GTACTTGATTGGGAA 252404 ||||| ||||||||| Sbjct 498139 GTACTGGATTGGGAA 498153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836325910276