Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq28 116 7e-21 seq21 87.8 3e-12 seq10 87.8 3e-12 seq22 86.0 1e-11 >seq28 Length=1168597 Score = 116 bits (128), Expect = 7e-21 Identities = 303/457 (66%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| || | | || ||||| ||||||||||| | || || || || | Sbjct 331278 CACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCAC 331219 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| ||||| ||| ||| | ||| ||| || || |||||||| ||| || Sbjct 331218 TTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC-GTCCTTGTAGAGGAC 331160 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | ||| |||||||||||||| | | || ||| ||| || || | || | Sbjct 331159 GAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCACACCTCCTGGGCCTG 331100 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || ||| | | || ||||||||||||||||| || || ||| |||| | Sbjct 331099 GATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCTT 331041 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACAT 31998 ||| || |||| | ||||| || ||| ||||| || | |||| ||| | | Sbjct 331040 CACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCT 330981 Query 31999 CGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGG 32058 || | || || |||| ||||| || | ||||| |||||| || || | | || Sbjct 330980 CGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGG 330921 Query 32059 CGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGT 32118 |||| ||| || | ||| ||| ||| |||||||| ||| | | || ||| | || Sbjct 330920 CGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCAGCGT 330861 Query 32119 GGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||||||||| || |||||||| | |||||||| Sbjct 330860 GCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCG 330824 Score = 91.5 bits (100), Expect = 3e-13 Identities = 304/473 (64%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 176025 ATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTA 176084 |||||||||| | ||| | ||| ||| |||||||| ||| ||| | ||||| Sbjct 905106 ATGAGGCGCTCGAGGTTGCTGATGATCTCCAGCGGGTTGTAGTTCGGGATGCTTGTGCTG 905047 Query 176085 AATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAG 176144 || || || || || || | || || |||||||| | | ||||||| |||| ||| Sbjct 905046 AACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGAATGTAG 904987 Query 176145 TATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCC 176204 | || || | | | ||||| || || ||| | | || | ||||||||| Sbjct 904986 AAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAATCGTCGGCC 904927 Query 176205 TTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCA 176264 |||||| || |||||| | | || | |||||||| || | | | || Sbjct 904926 GGGTGGAAGATGGCCCGGGAGACCTGCATGAGCCGGGTGAAGATGTAGCGGCCCGCGGCG 904867 Query 176265 CTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATG 176324 ||||||||| ||||| || || | |||||| || || | |||| || | Sbjct 904866 TGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGGCCATCCTTGCGCAGCAGCGGGACG 904807 Query 176325 TTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCG 176384 || || ||||| |||| || ||||||||||| || | | || ||| |||| Sbjct 904806 TTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGACGATCGTCTGCACAAGCGACTGCTCG 904747 Query 176385 CCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCT 176444 || ||||| || ||| || ||| ||| ||||||| |||| | || ||||| Sbjct 904746 CCATGGTGGTATGCGGAGTGCTCCGAGACGTAGCCGGCAAGCTGCACCACCTTGATGGAG 904687 Query 176445 TGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTT 176497 | || | ||||||||| || |||||||| ||||| ||||| |||||| Sbjct 904686 TTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTGGCCGGGCTT 904634 >seq21 Length=759606 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 442353 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 442410 >seq10 Length=554423 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 519727 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 519784 >seq22 Length=658755 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 || ||||| || || ||||| |||||||| || |||||| | || | ||||||||||||| Sbjct 497966 AGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAG 498025 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 || ||||| | |||||||| || | |||||| || || | | || | || | Sbjct 498026 TGCCGCTCCCCGTCGTTCAGCATTGC---CCAGTCCTTCATGTCGTTGCCCAGGTCGATC 498082 Query 10743 TCCTCCACGGTCCAGA 10758 |||||||| ||||||| Sbjct 498083 TCCTCCACCGTCCAGA 498098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621985269920