Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq28 242 4e-59 >seq28 Length=1168597 Score = 242 bits (268), Expect = 4e-59 Identities = 513/757 (68%), Gaps = 20/757 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| || ||||| || |||||| ||| || ||| ||||| |||||| Sbjct 330548 GCCACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTG 330607 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| ||| |||| ||| || | ||||| || ||||| ||||| Sbjct 330608 GTGGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTG 330667 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| ||| || || || || || | || ||| || | || || ||| | Sbjct 330668 ATCAGCAAAGCGGCCGGCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGC 330727 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| || ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 330728 TACATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAAC 330787 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||||||||| || || | | | ||||| | ||||| |||||| Sbjct 330788 AACACCGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTAT 330847 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGC-GAAA-GAACCAC-GG 94247 ||||||||||||||||| ||||| ||||||| |||| |||| | | ||| || Sbjct 330848 CTCGAGCCCTGGCACGCTGACGTCTTTGGCTTTC----TGCTGCTGAAACGCAACACGGG 330903 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| || | ||| | |||||||||||||| || ||| | ||||| || ||||| Sbjct 330904 AAAAGATGACCAGCGCGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTAT 330963 Query 94308 GAAACGCGTCGAGAAAAACTCCG---CCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 || ||| || ||||| | | |||| || | |||||| || || || Sbjct 330964 GAGACGTGT---GAAAAGCGAGGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGG 331020 Query 94365 ACTGTCCGA---CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCA 94421 || ||| | | ||| | | ||||| | || | || ||||| || | Sbjct 331021 TCTCAGCGATTGCTATGGTGAAGAG---TTTGAGCGGCTCTACGAGCGCTACGAGTCCGA 331077 Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 |||| | | ||| || | || | || ||||| | ||| |||| || Sbjct 331078 GGGCCGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCA 331137 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 | | |||||||| ||| | | || | | ||||||| | |||| |||||| ||||| Sbjct 331138 GATCGAGACGGGAGGGCCGTTCGTCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCA 331197 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 | || | || || ||||||| ||||||| || ||||| |||||||||||||| || || Sbjct 331198 GAAGAATCTTGGCACGATCAAGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTC 331257 Query 94602 TCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 || | |||| || ||||| ||||| | ||||||| Sbjct 331258 GCCACAGGAGACGGCGGTGTGCAACCTCGCCTCCATC 331294 Score = 111 bits (122), Expect = 2e-19 Identities = 198/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || ||||||||||| || || ||||| ||||||| || ||||| ||| Sbjct 331739 AACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAATAAC 331798 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||| ||| | ||| | | || ||||| ||| || ||| Sbjct 331799 GAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTC 331858 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268 || || | |||||| ||||| | |||||| | | | ||| | ||| || | Sbjct 331859 CCTGTTGTGAACAAGTACCTCGTCATGGACCTTATTGCGCGTGGTCTATGGAACGAGTCG 331918 Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAATACCGG 95326 | |||| | | | | ||||||||| ||| | || | || || |||| Sbjct 331919 ATGCGGAACGAGATCATCTCCTACAACGGCTCTATCCTCACTATTAACGGC--ATGCCGG 331976 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | ||| | | || ||| ||| ||||||||||||||| || |||||| Sbjct 331977 ACGACCTGAGGGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGC 332023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722977374560