Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq28 125 7e-24 seq9 89.7 5e-13 >seq28 Length=1168597 Score = 125 bits (138), Expect = 7e-24 Identities = 565/881 (64%), Gaps = 51/881 (6%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAA----TACTGCACAAT 146690 ||||| ||||| | ||| || || || ||||| | || || | |||| ||||| Sbjct 331296 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCT----GTGGCGACGTGTACTCGACAAT 331241 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTG 146748 ||| | ||| ||||| ||||||||| |||| | ||| || ||||| ||| || Sbjct 331240 CTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGC--TG 331183 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 ||||| | |||||||||||| | | |||| || || || |||| | | ||| | ||| Sbjct 331182 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGAT- 331124 Query 146809 AATCTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATT 146866 | | || || | ||| ||| | | | ||||| || | | ||||| Sbjct 331123 -AGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGC 331065 Query 146867 TCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGG 146926 |||||| | ||||| ||| || ||| ||| || || || | |||| Sbjct 331064 GCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGG 331005 Query 146927 GACAGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATC 146985 || | ||||| ||| | | || | || ||| ||| |||||||| ||| || ||| Sbjct 331004 GATCCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATC 330946 Query 146986 CAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAA 147044 || || || || | | |||||| || ||| || ||| |||||||| ||| Sbjct 330945 CACAGCGCGTAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA- 330888 Query 147045 GTTGAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTT 147103 | | || | | || | || | ||||| ||||| | || |||||| ||||| | Sbjct 330887 GCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCT 330828 Query 147104 TTCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 | ||||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | Sbjct 330827 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 330768 Query 147161 ACACGAGGCCGCCGGATTTTGTGGTGCCGTTG--------TATTGAGC----------GC 147202 |||||| ||| || | |||||||| ||| ||| || Sbjct 330767 GCACGAGCCCG------TTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGC 330714 Query 147203 TGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGT 147262 || | | |||||| ||| || | || ||| || || |||| || |||| | Sbjct 330713 GGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCT 330654 Query 147263 GCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAA 147321 || || | ||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 330653 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCAC-CAGGAAGCACGAG 330595 Query 147322 CACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTG 147381 | |||||| || ||||| || ||| || || ||| ||||||| ||||| | Sbjct 330594 CTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAG 330535 Query 147382 CCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCC 147441 ||| ||| | | ||||| ||| | || | | || ||||||||||| | Sbjct 330534 CCCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCA 330475 Query 147442 AGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 || ||||| ||||||| ||| ||||| || || ||| |||| Sbjct 330474 AGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACAAT 330434 >seq9 Length=594373 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || |||||||||||| Sbjct 375282 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 375341 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | |||| ||||| | ||| || || | | | | Sbjct 375342 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 375401 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || ||||||||||| || || || || |||||||||| Sbjct 375402 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 375438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500586024640