Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28 161 1e-34 >seq28 Length=1168597 Score = 161 bits (178), Expect = 1e-34 Identities = 891/1399 (64%), Gaps = 35/1399 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| | ||||||||||| ||||| | || || || || | |||| | | ||| Sbjct 330445 CCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGT 330504 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 ||||| |||||| |||||| || | |||| |||||| || || |||||||| Sbjct 330505 GCGTGAGACGTACGACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTT 330564 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||||| || || || | || |||||| | || ||||| | || ||||| || Sbjct 330565 TAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGA 330624 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATC-TCAAAGTGGGCTG 111849 ||| | ||||| |||| ||| || | || |||||| ||| ||||| ||| | Sbjct 330625 CAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAG-CGGCCG 330683 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAG-AGGTACA 111908 | || || || ||||| | || | || | | | | | | ||| ||||| Sbjct 330684 GCGGCATTGGTCTGCACGTGCACAACATCCGCG-CGGCGGGCAGCTACATAGCTGGTACG 330742 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 330743 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 330802 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | || || |||||||| | |||| |||||||| ||||| |||||| Sbjct 330803 GTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCAC 330862 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || || | | || || | || | |||| || | || || ||| | Sbjct 330863 GCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 330922 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG- 112144 ||||| ||||||| ||| || ||||| |||||||| || ||| ||| ||| || | Sbjct 330923 CGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATG-AGACGTGTGAAAAGCGA 330981 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || || ||| | || | ||| ||| | || |||||| |||| | ||||| Sbjct 330982 GGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGA 331041 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGC 112263 |||||||| |||||| |||||| || | || |||| | |||| | | Sbjct 331042 AGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-C 331099 Query 112264 CAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 ||| ||| || |||||| ||||| || ||||||| | |||||| || || | Sbjct 331100 CAG--GCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGT 331157 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 | || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 331158 TCGTCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCA 331217 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC--AGACAAAGATGAGACGGCTGT 112438 || | || ||||| || || || || | || | || | || || |||||||| || Sbjct 331218 AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAG--GAGACGGCGGT 331275 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTG 112497 ||| |||||||| || ||||| || || | || || |||| | | | || Sbjct 331276 GTGCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGACGTTGAGA-AGCGTGAGTTCA 331334 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTG-TCACAAAAAACCTAAACAGAGTTATT 112556 | | | ||| || || || ||| | | ||||| ||||||||| | |||||| Sbjct 331335 ACCACCAGCTTCTCTACACCGTGAC-AAAGCAGATCACACGTAACCTAAACCGGGTTATT 331393 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || | || | ||||| || ||||| || || ||| ||| | |||| || || Sbjct 331394 GACCGCAACTACTACCCGGTCGAGACGGCGCGCCGCAGTAACATGCGCAACCGCCCCATC 331453 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 || ||||| || || || |||||||| | ||||| || || | | |||| || Sbjct 331454 GGCCTCGGCGTGCAGGGGCTCGCGGACGCCTTCATCCTCATGCGACTGCCGTTTGTCTCG 331513 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 | || ||| || | || || || || || || || || || ||| | ||| Sbjct 331514 GCGGAGGCGCAGCGGGTGAACGCAGAGATCTTCGAAACGATCTACTTTGCTGCTGTCGAG 331573 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || |||| |||| ||| ||||| || || || ||||| ||| || || Sbjct 331574 TCGTCGATGGAGCTGGCGAAGGAGGATGGCCCGTACGAGACCTTCACGGGCAGCCCGGC- 331632 Query 112797 TCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGC----TTCACT 112848 || | |||| | || || || || |||||| ||| | | | || | | || || Sbjct 331633 -CAGCGAGGGCATTCTGCAGTTCGACATGTGGAAGAACGCGCGGCCCAACAGCGGTCGCT 331691 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 ||||||| | |||||||| | | | || ||| | || ||| || || Sbjct 331692 GGGACTGGGCCAGCCTCAAGGAGAAGGTGATGCAGGTGGGCATGCGCAACTCCCTGCTGG 331751 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || |||||||| || |||||| | || || | || ||||| || ||||| || | Sbjct 331752 TTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAATAACGAGTGCTTCGAGC 331811 Query 112969 CCTACACGACGAACATCTA 112987 ||| ||| |||||||||| Sbjct 331812 CCTTCACCTCGAACATCTA 331830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742120665920