Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 123 3e-23 seq23 86.0 7e-12 seq36 82.4 9e-11 seq24 82.4 9e-11 seq16 82.4 9e-11 >seq28 Length=1168597 Score = 123 bits (136), Expect = 3e-23 Identities = 550/856 (64%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || |||||||| | |||||||| | | Sbjct 331302 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACA 331243 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 331242 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331183 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || ||||||||||| | | | ||| |||||||| |||| |||| || || Sbjct 331182 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331123 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 331122 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 331067 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 106751 |||||| |||||||| ||| ||| || ||| |||||| || | ||| Sbjct 331066 GCGCTCGTAGAGCCGCTCAAACTCTTCA-CCATAGCAATCGCTGAGACCCGGGCACGTGT 331008 Query 106752 CTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 ||| | || | ||| || || | || || || || |||| || || ||||| Sbjct 331007 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTC-ACACGTCTCATAAACAGATCTGGG 330949 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 |||||||| | | ||||| || | || || || | || |||| || Sbjct 330948 ATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 330889 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | || || | | || || |||||||| ||||| |||||||| |||| | ||| Sbjct 330888 AGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCC 330829 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || || | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 330828 TTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 330769 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 107046 || | | || | || || || || || || || | || | | Sbjct 330768 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT-GTAGCTGCCCGCCGCGCGGAT 330710 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 107105 | || | ||||| ||||| || || | || ||||| ||| ||||||||| | | Sbjct 330709 GTTGTGCACGTGCAGACCAATGCCGCC-GGCCGCTTTGCTGATCACGGCACACTCCTTCA 330651 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 330650 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 330591 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 330590 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 330531 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| |||||| ||||| ||| | | ||| | ||||| ||||| | | Sbjct 330530 TGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAG 330471 Query 107286 CCACACGCATAAACAT 107301 | |||||||| ||||| Sbjct 330470 CGACACGCATGAACAT 330455 >seq23 Length=781789 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 227625 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 227566 Query 136226 GGTAGGA 136232 ||||||| Sbjct 227565 GGTAGGA 227559 >seq36 Length=2743999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1661541 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1661482 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1661481 CAGGTAGGAG 1661472 >seq24 Length=876943 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 658755 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 658814 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 658815 CAGGTAGGAG 658824 >seq16 Length=698238 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 445875 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 445816 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 445815 CAGGTAGGAG 445806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980534508640