Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 239 8e-58 seq22 89.7 1e-12 >seq28 Length=1168597 Score = 239 bits (264), Expect = 8e-58 Identities = 964/1491 (65%), Gaps = 47/1491 (3%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 |||||||| ||||| |||||| ||| | || | | ||| ||| ||||||||||| | Sbjct 332085 AGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTC-GCGTGCCATGTCTATCAG 332027 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | | ||||||||||||| | | | || | ||||| || || | ||| Sbjct 332026 CTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCGTCCGGCATGCC 331967 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | || | | | ||| || ||| | | | || ||||| ||||||||| Sbjct 331966 GTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCA 331907 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || | | ||| | |||| |||| ||| || | |||| || || Sbjct 331906 TAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCT 331847 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | ||| || ||| ||||||||| || |||||| || || || Sbjct 331846 CAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAG 331787 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | ||| || || |||||||| || ||||| || ||| | || || Sbjct 331786 AATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCAC 331727 Query 213053 CTCGCCGATGAGG--CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACA-GGTCCTCG 213107 || || || | | || || ||| ||||||||||| | || || || || Sbjct 331726 CT-GC--ATCACCTTCTCCTTGAGGCTG-GCCCAGTCCCAGCGACCGCTGTTGGGCCGCG 331671 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 | ||| ||||||||||| ||||||| ||||| | ||| | ||||||||| | | Sbjct 331670 -CGTTC---TTCCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAG 331615 Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 | ||| ||||||| |||||| |||||||| |||| || | ||||| ||||| Sbjct 331614 GTCTCGTACGGGCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACAGCAGCAAAGTAG 331555 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC 213287 || ||||| || ||||| ||| | | || ||||| | || || |||| | Sbjct 331554 ATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGC 331495 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 ||| | ||| | || || |||||||| || |||| ||||||||| | || | || | Sbjct 331494 ATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATG 331435 Query 213348 TTAGACTT-GGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||| || || || | ||| | ||||| |||||| ||| || | | ||| |||| Sbjct 331434 TTA--CTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGT 331377 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC--ACGTAGCCCC- 213462 | || ||| | || || || | || || ||| |||||| ||| | | Sbjct 331376 TACGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAA 331317 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 |||| || || ||||| |||||| ||| |||||||| || ||| |||||| | Sbjct 331316 CGTCG---ACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTG 331260 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 |||||||| | ||||| ||||| ||||| ||| ||| ||||| || |||| Sbjct 331259 GCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCT 331200 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| ||||| |||| | ||||||||||| | | | || || ||||| | Sbjct 331199 TCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGA 331140 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| |||| || ||| | | | ||||| || | | |||| || Sbjct 331139 TCTGAGACTCCAGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCT---TGAC-GCCG 331084 Query 213703 CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA---CCCTG 213758 ||| | | | |||||| | ||||||||| | || || | || || | ||| Sbjct 331083 CGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTG 331024 Query 213759 TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTC-T 213817 || ||||| || | |||| ||| || |||| | ||| || | | || | | Sbjct 331023 ---AGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGT 330967 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || ||| ||||| || |||| |||||||||| ||| ||||| | || | | || || Sbjct 330966 CT-CATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATC 330908 Query 213878 CACTCCAGAGTT---TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| | ||| ||| |||| |||||| |||||| ||| |||||||| ||||| Sbjct 330907 TTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGCCAAAGACGTCAGCGTGCCAGGGCTC 330851 Query 213935 CATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | |||| ||| ||||||||| | ||| ||||||||||||||| | ||| Sbjct 330850 GAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGT 330791 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 ||||||||| ||| || | || || |||||||| ||| ||||| || || ||||| Sbjct 330790 GTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT 330731 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 || ||| | || | | |||| || | || || ||||| ||||| ||| Sbjct 330730 GTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCT 330671 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||||| ||| || | ||| || || ||||||| | |||||||| || Sbjct 330670 GATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTC 330620 >seq22 Length=658755 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 48457 CTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAG 48516 ||||||||||||||| || | ||||| ||||| ||| || | ||| | || | Sbjct 497905 CTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGC 497964 Query 48517 CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 |||||||| ||||||| || || | || ||||||||||| || || || | ||| Sbjct 497965 AAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAA 498024 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACT 48634 || ||||| || | | |||||| |||| ||| | ||| ||||||||||| | Sbjct 498025 GTGCCGCTCCCCGTCGTT--CAGCATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATC 498082 Query 48635 TCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTACATGCCCCATATGTC 48687 || ||||| ||||||| | | | | ||| | |||||| ||| ||| ||||| Sbjct 498083 TCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTACTTGCGCCAGATGTC 498135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532380810240