Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 168 1e-36 >seq28 Length=1168597 Score = 168 bits (186), Expect = 1e-36 Identities = 543/826 (66%), Gaps = 35/826 (4%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || || ||||| ||||||||| || || || | || || || ||||||| Sbjct 331242 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331183 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| |||||||||||||| | || || || || ||||| | ||||| | |||| || Sbjct 331182 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331123 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCA 221935 ||| | || |||| || || ||||||| | | |||||| || | Sbjct 331122 GCAAACCACACCTC-CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAG 331066 Query 221936 TACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 | || |||||| ||||||| |||||| || ||| || || || ||| || Sbjct 331065 CGCTCG---TAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTG 331009 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCC-TCTGCATGAAGAGGTCCGG 222054 |||| |||||| |||| | | | | ||| || | ||| ||| || || || || Sbjct 331008 TTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGG 330950 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT---TTT 222111 |||||||||||| | ||||| || | || ||||| || || || |||| ||| Sbjct 330949 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330890 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||| || ||| |||| | |||||||||||| ||||| ||||||||||| | || Sbjct 330889 CAGCAG---CAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGC 330833 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAG 222231 ||| ||||| ||| ||||| ||||| | | |||||||| ||| || Sbjct 330832 GCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAG 330773 Query 222232 GGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCC 222290 | || || || ||||| || ||||| || || ||||| | ||||| || | Sbjct 330772 CATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCC-GCGC 330714 Query 222291 TCAGGTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 | ||| || ||||| || || || ||||| ||| ||||| ||| || Sbjct 330713 GGATGTTGTGCACGTGCAGA----CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACAC 330658 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACA 222405 ||| || ||||| |||||| || || ||| ||||| |||| || ||| || || Sbjct 330657 TCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACG-CCACCAGGAAGCA 330599 Query 222406 AGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || ||| || | || | || | ||||||||| || || || ||||||| || || Sbjct 330598 CGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAA 330539 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACG---ACTCTGGCGATGTTGTCCCCGTG 222522 | ||||| | ||||| || ||||||||||| ||| | ||| | ||| | | ||||| Sbjct 330538 GAAGCCCTTGGACATAAGGTCGTACGTCTC-ACGCACATTCTTGAGATCT--GCGCCGTG 330482 Query 222523 AATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA 222568 ||| | ||| | |||| |||| | ||| || | ||||||| Sbjct 330481 AATGCCAAGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACA 330436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844382019840