Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28 100 3e-16 >seq28 Length=1168597 Score = 100 bits (110), Expect = 3e-16 Identities = 546/862 (63%), Gaps = 11/862 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| | ||||||||||| ||||| | ||||| ||||| | ||| | | ||| Sbjct 330445 CCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGT 330504 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 330505 GCGTGAGACGTACGACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTT 330564 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | ||||| ||| | |||||||| | || ||||| || Sbjct 330565 TAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGA 330624 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC-TCAAAGTGGGCTG 75449 | ||| |||| ||||| | || || | ||||||||| ||| ||||| ||| | Sbjct 330625 CAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAG-CGGCCG 330683 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGTATTCGGGGGACA 75508 | || ||||| ||||| | || | | | || | || || || || Sbjct 330684 GCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGCT-ACATAGCTGGTACG 330742 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 330743 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 330802 Query 75569 GTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | || | || || |||||||| || |||| ||||| | || || ||||| Sbjct 330803 GTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCAC 330862 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || || || | | || || | | || |||| || | || || || Sbjct 330863 GCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 330922 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| | | |||||||| ||||| || || |||| || | ||| || | Sbjct 330923 CGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGACGTG-TGAAAAGCGA 330981 Query 75746 GGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTG 75803 || || ||| | || | ||| ||| | || |||||| ||| || | |||| Sbjct 330982 GGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTAT-GGTG 331040 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | |||||||| |||||| || || ||||| | | | ||| | | Sbjct 331041 AAGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCC 331100 Query 75864 CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 ||| || || ||| ||||| || | || |||| ||||| ||| || | Sbjct 331101 AGGCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCG 331160 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 | || |||||||| || || |||| ||| ||||| |||||| | || || |||||| Sbjct 331161 TCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCAAGT 331220 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 |||| || || |||||||| ||| | |||||||| | |||||||| || |||| Sbjct 331221 GCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAGGAGACGGCGGTGTGCA 331280 Query 76044 ATTTGGCATCAATCGCCCTTCC 76065 | | || || ||||| || || Sbjct 331281 ACCTCGCCTCCATCGCGCTGCC 331302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569331543680