Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 183 4e-40 seq22 132 6e-25 seq31 96.9 4e-14 >seq28 Length=1168597 Score = 183 bits (202), Expect = 4e-40 Identities = 210/280 (75%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| Sbjct 330814 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330755 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| |||||| || || || | |||| ||| || ||||| | |||||| || ||| Sbjct 330754 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330695 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || ||||||||||||| ||| ||| | || |||| || |||||||||||||||| Sbjct 330694 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330636 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| ||| ||||| |||| || |||||||| ||||||| | || | Sbjct 330635 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330576 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||| ||||| || || || || |||||| || Sbjct 330575 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAA 330536 >seq22 Length=658755 Score = 132 bits (146), Expect = 6e-25 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 869638 GATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTC 869697 ||||||||| || | |||||| ||||| || || | | |||||| ||| | || || Sbjct 497887 GATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTC 497946 Query 869698 CTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGC 869757 ||||||| || || || |||||| || |||||||||||| ||||||| || || Sbjct 497947 GCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGC 498006 Query 869758 CAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTC 869817 || ||||||||||| ||||| ||||| ||||| | ||| |||||| |||| Sbjct 498007 AAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCATTGCCCAGTCCTTCATGTC 498066 Query 869818 GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTC 869877 | || ||||| | |||||| | |||||||| || ||| || |||||| | Sbjct 498067 GTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTACTTGCG 498126 Query 869878 CCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 498127 CCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAGCGGGTTCTC 498177 >seq31 Length=1505910 Score = 96.9 bits (106), Expect = 4e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 38957 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 38898 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| ||||||| | |||||||| |||||| Sbjct 38897 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 38852 Score = 93.3 bits (102), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | |||||||||||||| | Sbjct 1281518 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1281459 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | |||||| | |||||| | || || || ||||| Sbjct 1281458 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1281399 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | ||| || |||||| ||||| || || || |||| Sbjct 1281398 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1281355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136245671412