Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq28 96.9 3e-15 seq9 87.8 2e-12 >seq28 Length=1168597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 190/277 (69%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 139360 CACTTGTCAGGACACATGAGCGACCA-TACGCCGTTCGCCTTG-ACGCGCCTCATGAACA 139417 ||| ||| ||| ||| |||| ||| | | || |||| || || || ||||| |||| Sbjct 331014 CACGTGTTGGGATCCATCAGCGTCCACTTCCCC--TCGCTTTTCACACGTCTCATAAACA 330957 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGT 139477 |||| || ||||||| ||| | | | ||||| || || || || ||| ||| Sbjct 330956 GATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGT 330897 Query 139478 TACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | ||||||| || || |||| |||||||||||||| || || ||||||| ||| | Sbjct 330896 TGCGTTTCAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGA 330837 Query 139538 TTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 ||||| || || || ||| || || || |||| || | | || ||||| |||| Sbjct 330836 AGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGC 330777 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT 139631 | | ||| ||| | || ||| ||| || ||||| || Sbjct 330776 GTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGT 330740 >seq9 Length=594373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || |||| || || || | Sbjct 375439 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCG 375380 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 375379 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 375320 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || || ||||||| ||||| || ||||||||||| Sbjct 375319 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 375282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897397546080