Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq28 165 1e-34 seq22 123 4e-22 seq31 98.7 2e-14 >seq28 Length=1168597 Score = 165 bits (182), Expect = 1e-34 Identities = 199/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| Sbjct 330814 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330755 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| |||||| || || || | |||| ||||| ||||| | |||||| || ||| Sbjct 330754 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330695 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || |||||||||||||| ||| ||| | || |||| |||||||| |||||||||| Sbjct 330694 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330636 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| ||| ||||| ||| ||| |||||||| ||||||| || | Sbjct 330635 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330576 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||| || ||||| || || || || Sbjct 330575 TGCCGGCGTTAAAGAGGGTCGGGGTGGC 330548 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| |||| ||||| ||||| || || | Sbjct 330973 CACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG 330914 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || ||| |||||||| || Sbjct 330913 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGG 330854 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||| ||||||||||||||||| |||||||| Sbjct 330853 CTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCC 330812 Score = 89.7 bits (98), Expect = 8e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||| || || ||||| || | | | ||| |||| ||| || || | || |||| Sbjct 331910 TCCATAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGC 331851 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| ||||| ||||||||| |||| | |||| | |||| | |||| Sbjct 331850 CGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGC 331791 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 | || |||||||| || | || || |||||| | || || ||||| |||||||||| || Sbjct 331790 CGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGC 331731 Query 2069744 CGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 | ||| |||| | || ||| | ||||||||||||| ||||| Sbjct 331730 CCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCT 331682 >seq22 Length=658755 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 497927 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 497986 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 497987 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 498046 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 498047 ATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 498106 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 498107 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 498166 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 498167 AGCGGGTTCTCCTGCTGCAGCGGCTC 498192 >seq31 Length=1505910 Score = 98.7 bits (108), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | |||||||||||||| | Sbjct 1281518 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1281459 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| |||||| | |||||| | || || || ||||| Sbjct 1281458 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1281399 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | ||| || |||||| ||||| || || || |||| Sbjct 1281398 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1281355 Score = 93.3 bits (102), Expect = 7e-13 Identities = 206/299 (69%), Gaps = 19/299 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 38957 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 38898 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || Sbjct 38897 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-- 38840 Query 653014 GTCGCT--CAACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCA 653070 |||| ||| | | || || ||| |||||| | || | ||||| |||||| || Sbjct 38839 TACGCTTCGAACTTC-AACATGCGCATGGACACCACCGCCCATGTCCTCTTCTACCCACA 38781 Query 653071 GGTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCG 653125 |||||||||| || ||||| ||||| ||| | || ||| | |||| Sbjct 38780 AAAACCGCTGGTGCGCACCAAAGCCAT----GACGTACATGCACAGCAACGATCTGCCCG 38725 Query 653126 ATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGAC---CCCTACAACCAGGAGGACTC 653181 ||||| || ||| ||||||||| | || || ||||||||| |||||||| Sbjct 38724 -CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGTGGCTACAACCAAGAGGACTC 38667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242570515804