Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28 383 2e-101 seq9 125 7e-24 seq22 86.0 6e-12 seq8 82.4 7e-11 >seq28 Length=1168597 Score = 383 bits (424), Expect = 2e-101 Identities = 965/1451 (67%), Gaps = 37/1451 (3%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 || |||| ||||| || | ||||||||| ||||| || || | || | ||| Sbjct 331878 AGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAG 331819 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || || || || || ||||||| ||||| | |||||||| ||| | || || |||||| Sbjct 331818 GTGAAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATG 331759 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||| |||||||||| || | | | || ||| || ||| Sbjct 331758 GGGGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCC 331699 Query 148431 CAGTCCCAGAG-CGGCGACGGTGTCACG-----TTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||| | | || | | | || |||||||||||| ||||||||||||| Sbjct 331698 CAGTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCC 331639 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || ||||||||| | | | |||||| || | | || |||||| || || Sbjct 331638 TCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CAT 331580 Query 148545 CT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA---GCAGCGC 148600 | || ||||| || | |||| ||||| ||| || | ||| | || |||| Sbjct 331579 CGACGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGC 331520 Query 148601 CGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 | ||| | | | |||||| |||| | | || ||||| || || ||||| || Sbjct 331519 CTCCGCCGAGA---CAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCAC 331463 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 ||| | ||| ||||| |||| ||||| | ||||||| |||||| ||| |||| Sbjct 331462 GCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACCGGGTAGTA 331403 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780 ||||||||| || | | || || || || | | |||||| | || || | Sbjct 331402 GTTGCGGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTTGTCACGGTGTAGAGAAG 331343 Query 148781 TTCA------AAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAG 148834 | || || ||| ||| | ||| | | || || ||||| ||||| || Sbjct 331342 CTGGTGGTTGAACTCACGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAG 331283 Query 148835 ATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCT 148894 |||||||| |||||||| | || | ||||||| || ||||| | ||| || || Sbjct 331282 GTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGA 331223 Query 148895 GCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAG 148954 ||| |||||| ||| | ||||| || || |||||||||||| ||||||||||| || Sbjct 331222 GCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAG 331163 Query 148955 CATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGC 149012 | | |||| || || || || | ||| | |||| || || | | || ||||| Sbjct 331162 GACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA--CACCTCCTGG 331105 Query 149013 GCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | || || ||| ||||| |||||| || |||||||| ||| Sbjct 331104 GCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAAC 331045 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | || || ||||||||| |||||| |||||| ||| || ||| |||| |||| Sbjct 331044 TCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTC 330985 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || || | ||| || ||||||||||||| || | ||| |||||||| | ||||||| Sbjct 330984 CCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCG 330925 Query 149193 CG--CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 || ||| || ||| || ||| ||||||| ||| || | || || | || Sbjct 330924 CGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGT 330867 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||| ||||| | || || |||| |||||||||||||| ||||||||||| Sbjct 330866 CAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGT 330807 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | |||| ||| | ||||||| || || || | ||| || | | || | | |||| Sbjct 330806 CCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGC 330747 Query 149368 CGTTAGTAG-AGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426 |||| ||| ||||| || ||||| ||| || | |||||||||| | || ||| Sbjct 330746 CGTTCGTACCAGCTA-TGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATG 330688 Query 149427 CCGCCG-CCGTACTTTGA-GATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGA 149484 |||||| ||| ||||| ||| | || || || ||||| ||||||||| |||| Sbjct 330687 CCGCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGA 330630 Query 149485 TGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGG 149544 ||||||| |||| | || ||| |||||||||| ||||||||| | ||||||| Sbjct 330629 TGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGG 330570 Query 149545 CCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACT 149604 | || | ||| ||| ||||||| || || | || | ||| | ||||||| || Sbjct 330569 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAGGTCGTACGTCT 330510 Query 149605 CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCT 149664 | |||| | | || |||| || ||||| | ||||| ||||| | ||| |||| Sbjct 330509 CACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGACACGCATGAACATCTGCT 330450 Query 149665 GCGGTCGCTCC 149675 | || |||||| Sbjct 330449 GTGGGCGCTCC 330439 >seq9 Length=594373 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || |||||||| |||||| Sbjct 375282 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 375341 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | ||||||| | |||||||| || | | || Sbjct 375342 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 375401 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || ||||||||||| || || ||||| |||||||||| Sbjct 375402 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 375438 >seq22 Length=658755 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 121042 ACGATACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCG 121101 || || | |||| | |||||||||| || |||||||||||||| ||||| ||||| || Sbjct 497978 ACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCG 498037 Query 121102 TCCGTGAGCTTGTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTC 121161 || | ||| | ||| | | | |||| ||| ||| |||||||| |||||||||| || Sbjct 498038 TCGTTCAGCAT-TGC-CCAGTCCTTCAT-GTCGTTGCCCAGGTCGATCTCCTCCACCGTC 498094 Query 121162 CACATGCA 121169 || ||||| Sbjct 498095 CAGATGCA 498102 >seq8 Length=502718 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/114 (76%), Gaps = 6/114 (5%) Strand=Plus/Plus Query 19954 CACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCAGTA 20013 ||||||||||||||||| |||||| |||| | ||||||||||| |||||| |||||| Sbjct 413520 CACGCGCACGTAGCCCTTCTCGCCCCAGTCCTCACCCCACGAGTTCTTGATCACCCAGTA 413579 Query 20014 CGGCACGT---TGTTCTCGACGCCGTAGCCCACGAGCAGCACCGCGTGGTTCAG 20064 ||| || | ||| | ||| || ||||||||||| |||||||||| Sbjct 413580 CGGAACCYCACCGGTCT---TGTTGTACCCGACGAGCAGCACGCCGTGGTTCAG 413630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420582460640