Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq28 181 2e-39 seq22 147 3e-29 seq31 107 3e-17 >seq28 Length=1168597 Score = 181 bits (200), Expect = 2e-39 Identities = 277/394 (70%), Gaps = 17/394 (4%) Strand=Plus/Plus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 || ||||| || ||| | ||| ||||||||||||| |||||| | | || || || Sbjct 330437 GTGGAGCGCCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGC---GCAGAT 330493 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTC 259912 || | |||| || ||| || ||||| ||||| || || ||| Sbjct 330494 CTCAAGAATGTGCGTGAG------------ACGTACGACCTTATGTCCAAGGGCTTCTTC 330541 Query 259913 ACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCGTG 259971 ||| || || || || |||||||| |||||||| ||| ||||| ||| | ||||| Sbjct 330542 ACCCACGCCACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCA-AATGAGCTCGTG 330600 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 ||| ||| ||| ||||| || ||||| |||||||| |||||||| ||| |||| Sbjct 330601 CTTCCTGGTGGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTG 330660 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGC 260091 || | ||| ||| |||||||||||||| ||| | || ||||| | ||||| || Sbjct 330661 TGCCGTGATCAGCAAAGCGGCCGGCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGC 330720 Query 260092 GGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGT 260151 |||| |||| | || || || |||||| ||| ||||| || ||||| ||||| ||||| Sbjct 330721 GGGCAGCTACATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGT 330780 Query 260152 TTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || ||| |||| || |||||||| |||||| || Sbjct 330781 CTTCAACAACACCGCCCGCTACGTGGACCAGGGC 330814 >seq22 Length=658755 Score = 147 bits (162), Expect = 3e-29 Identities = 219/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| ||||| ||||| |||| ||||| Sbjct 498192 GAGCCGCTGCAGCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 498133 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 498132 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCT 498074 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||| ||||| ||||| ||||| || ||||||||||| Sbjct 498073 GGGCAACGACATGAAGGACTGGGCAATGCTGAACGACGGGGAGCGGCACTTCATCAAGCA 498014 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||| || ||||||| |||||| ||||| || |||||| || || |||| Sbjct 498013 CGTGCTTGCC-TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCT 497955 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||||||||| || ||| |||||||||||| | || | Sbjct 497954 TCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 497895 Query 1456016 AAAACATC 1456023 | |||||| Sbjct 497894 AGAACATC 497887 >seq31 Length=1505910 Score = 107 bits (118), Expect = 3e-17 Identities = 307/462 (66%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| |||| || | || ||| | ||| ||| |||||| ||||| | Sbjct 37781 CTCCATCTCGCCAAACCGCAGTCCACCCTCGTGCGCGCGACCCTCGGTTGGCTGGCGGAC 37840 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 ||| ||| | || |||||||| || ||||| |||||||| || | ||| ||| Sbjct 37841 CAGCGGCTGCAGCGGCCCGCGTGGGCGTGCGTGGATCTTGTCACCGGATAAGTGCTTCAG 37900 Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTGTGCG 1600436 | ||||||| || || ||| | ||||||| |||| ||| ||||||||| Sbjct 37901 GCGCTGGTAGAAGGTGGG-GCCAAAGAAGATCAGATGGTCCAGCGGCAGACCGGTGTGCC 37959 Query 1600437 GGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCG-AGCCAACTCGGCGGCG 1600495 | |||||| ||| ||||| || |||| || ||| | | | |||| | | | Sbjct 37960 CATTGTAGAGGCACTCGTTGCCATACCGCT-GCGACCGAAGGGCATGCAACGCCTTGCCA 38018 Query 1600496 ACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAG 1600555 | ||||| ||| |||| || || ||||| ||| || | ||||| | ||| Sbjct 38019 AAGTCGTCCACGACGACGGAGCAGAACGGCGTTGCGTACACCTCGCCGCCCTTGTAGCAC 38078 Query 1600556 GCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCG 1600615 ||||||||||| ||| | || |||| | | ||| |||||||| || || |||||| Sbjct 38079 GCCACCTTGCCGGCGAGCGTTTCGATCAGGTGGGCCACCGTCATGCGGGAGGGAATGGCG 38138 Query 1600616 TGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCG 1600675 || |||||||| | | ||| ||| | ||| |||| | || ||||||||||||| Sbjct 38139 TGGGGGTTGATGATGAGGTCCGGCACGATGCCGTCGCG-GTTGA--AGGGCATGTCCTC- 38194 Query 1600676 GTGGAG-CGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCG 1600716 ||| | | | |||| |||||| ||||| || ||||| Sbjct 38195 CTGGCGAAACTGGATGCCGTTGGTGCCTTTTTGTCCATGGCG 38236 Score = 93.3 bits (102), Expect = 6e-13 Identities = 206/299 (69%), Gaps = 19/299 (6%) Strand=Plus/Plus Query 1601177 GAGTCCTCCTGGTTGTAGGG---GTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATC 1601233 |||||||| ||||||||| || || | ||||||||| ||| || ||||| | Sbjct 38667 GAGTCCTCTTGGTTGTAGCCACTGTAGCACGAGATGGCCACCACCGCGTTGTGGCCGG-C 38725 Query 1601234 GGGAGGCGCGTGGCGCCG-ATG-ACGTCCTCCATGGC---GGTCTGCACCAGCGGCACCT 1601288 ||| | ||| || | ||| ||||| ||||| ||| |||||||||| | Sbjct 38726 GGGCAGATCGTTGCTGTGCATGTACGTC----ATGGCTTTGGTGCGCACCAGCGGTTTTT 38781 Query 1601289 GCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCGGCGTTG--AGCGACA 1601345 | |||||| | ||| | || | ||||| ||| ||||| | | ||| |||| Sbjct 38782 GTGGGTAGAAGAGGACATGGGCGGTGGTGTCCATGCGCATGTT-GAAGTTCGAAGCGTA- 38839 Query 1601346 CGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGT 1601405 || | || || |||||| |||||||| | ||||||| |||||||||| | |||||||| Sbjct 38840 -GATGCCCATGGCCTGCTTACCCATGGCGGACTGGTAGGTGTTGCGCGGGGACTGGTTGT 38898 Query 1601406 GGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCG 1601464 |||||| ||||||| ||||| ||||| ||| || || | | ||||| | |||| Sbjct 38899 GGTTGGGGTACGGGATAATGGAGGCGCAAATGCCGAGAATCATCGACGGGTCCATCTCG 38957 Score = 93.3 bits (102), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 1818082 TCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAA 1818141 |||| || || || ||||| |||||| || ||| | || ||||| || || || | Sbjct 1281355 TCACCCGTTCCGGGAAGGTCAGCGTCATGGCGACGGAGAACGGTACGCCGACTTCATCGA 1281414 Query 1818142 TGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCA 1818201 ||| || | |||||| | ||||||| | ||| || | ||||| ||||||||||||| Sbjct 1281415 CGTCGATGTTTGGGTCGCCGGTGATGACCGTGCGGGCCGAAAAGTCTACGCGCTTGCCCA 1281474 Query 1818202 TGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 | | |||||||| | || ||| | ||| ||||| | ||||||| Sbjct 1281475 TCAAGTTGCCGCGCAGCCGGCCGTACTTCCCCTTCAGCCGCTCC 1281518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807727733832