Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 194 2e-44 seq9 113 5e-20 seq15 104 3e-17 >seq28 Length=1168597 Score = 194 bits (214), Expect = 2e-44 Identities = 796/1233 (65%), Gaps = 34/1233 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||||| |||||||| ||||| |||| ||| ||||||||||| Sbjct 331663 CCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGG 331604 Query 80601 GCCCTCCGTCTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657 ||| ||| ||| |||||||| ||||||| | | || || || || || Sbjct 331603 GCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACA---GCAGCAAAGTAGATCGTTTC 331547 Query 80658 AAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 |||| | |||||| |||| |||||| | | | |||| || | ||| | | Sbjct 331546 GAAGATCTCTGCGTTCAC-CCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGCATGAGGA 331488 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 |||| |||| || || ||||| ||||||| | |||| ||||||| |||| |||| | Sbjct 331487 TGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGC 331428 Query 80777 G-CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 | | || | || || ||||| |||| || || || ||||| ||||| ||||| Sbjct 331427 GGCGCGCCGTCTCGACC-GGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGTTACGTGTG 331369 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT---GGTTCCC--CTTC-ACA 80889 | | ||| || | || ||| || ||| | | ||| | | || || Sbjct 331368 ATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAACGTCGACG 331309 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 || ||| || | ||| || || |||||||| ||| ||| | | || || Sbjct 331308 AAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTAC 331249 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| || |||||||| | || || |||| || || || || || |||||||| ||| Sbjct 331248 TCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGAC 331189 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| |||||| |||||||||||| | | |||| || ||||||| ||| |||| Sbjct 331188 TTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCC 331129 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| || ||| | ||| | |||| || | |||| | ||| |||| | | Sbjct 331128 AGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCG 331069 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| ||| | || |||| |||| | || |||| | |||||| Sbjct 331068 TAGCGCTCGTAGAGCCGC-TCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGT 331010 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||| || |||||| ||| | ||| | | ||| |||| || || || Sbjct 331009 GTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGG 330950 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 |||||| || ||| ||| ||||||||| |||| || || | ||| |||| | Sbjct 330949 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330890 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || | |||||| | | || ||| || ||||| ||||| ||||| ||||||| | || Sbjct 330889 CAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCC 330830 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 |||||| || ||| ||||||| ||||| ||||| || ||| || || || | ||| Sbjct 330829 CTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCAT 330770 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | || || | ||| ||||||||||| | || ||| ||||| | Sbjct 330769 TGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGAT 330710 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTG-AAATCTGAGCACACCGGTTCA 81544 ||| | ||||| ||||| || | || ||||| ||| |||||| |||| Sbjct 330709 GTTGTGCACGTGCAGACCAATGCCGCC-GGCCGCTTTGCTGATCACGGCACACTCCTTCA 330651 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTG 81601 || || || || || |||||||| |||| ||| | | || || ||| | |||| Sbjct 330650 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT-- 330593 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 ||| || || | | |||||| || || || || ||||| ||||| |||| | | Sbjct 330592 -CATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330534 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC--GCGTGGAATATCGTCACCGTGAATACC 81719 || ||||| ||||| || || || || | || | ||| | |||||||| || Sbjct 330533 CCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTG--AGATCTGCGCCGTGAATGCC 330476 Query 81720 GATAGCTACACGCATAAACATGTACTG-GGGCG 81751 | ||| |||||||| ||||| | ||| ||||| Sbjct 330475 AAGAGCGACACGCATGAACATCTGCTGTGGGCG 330443 Score = 131 bits (144), Expect = 2e-25 Identities = 291/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||||| ||||||||| | | | | ||||| ||||| ||| || | Sbjct 904625 GACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAAGCGCAACTTGGTG 904684 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||| ||||||| |||||| | |||||||| | ||||| | || || ||||| Sbjct 904685 AACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTCCGCATACCACCAT 904744 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 |||||| |||||| | || || ||| | || ||| ||||||| || || Sbjct 904745 GGCGAGCAGTCGCTTGTGCAGACGATCGTCGGAATGGCGCAGGACTTTGTGGGCAGCAAC 904804 Query 32164 AACCTGAACTTACTCGAGCCATC-TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | | || | || | ||| ||||| || || || || |||||||||||| Sbjct 904805 AACGTCCCGCTGCT-GCGCAAGGATGGCCAGTTCGGTACGCGTCTGCACGGTGGCAAGGA 904863 Query 32223 T---GCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATT 32277 || ||| || || |||||||||||||| ||| ||| | || || || Sbjct 904864 CCACGCCGCGGGC---CGCTACATCTTCACCCGGCTCATGCAGGTCTCCCGGGC--CATC 904918 Query 32278 TTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAG 32337 ||| ||||| | |||||| ||| || ||||||| || ||||||| ||| ||| Sbjct 904919 TTCCACCCGGCCGACGATTTTGTGGTCGAGTACAAGGACGACGACGGTCTCTCGGTGGAG 904978 Query 32338 CCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGA 32397 || | ||||||| |||||| | |||||| | |||||||||| | |||||||| Sbjct 904979 CCTTTCTTCTACATTCCGGTCATCCCGATGGTGCTGGTGAACGGCACGACGGGCATCGGC 905038 Query 32398 ACGGGGTTCAG 32408 || |||||||| Sbjct 905039 ACCGGGTTCAG 905049 >seq9 Length=594373 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 375436 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 375377 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 375376 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 375317 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||||| || || || || || ||||| || ||||| Sbjct 375316 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 375282 >seq15 Length=618288 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||| Sbjct 523852 GAAGGTGGCGCAGCTGTCGGGCTACATCTCAGAGGCGTCGGCGTTTCACCACGGCGAGGC 523793 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| ||| | || ||| | || Sbjct 523792 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACCGGCGGCAACAACATCAA 523733 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 523732 CCTGCTCGTGCCAGAGGGTCAGTTCGG 523706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310143360320