Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq31 98.7 8e-16 >seq6 Length=516819 Score = 136 bits (150), Expect = 3e-27 Identities = 400/610 (66%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 29860 CTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTT 29919 ||||||||| | ||| || | | |||| | |||||||||| ||||| || ||| | Sbjct 382511 CTCGAGCTGCGACTTGAGGGCACCGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGT 382452 Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 382451 GTGCACAAGCTCACCGGGCCGCAGGCCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 382392 Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039 |||| ||||||||| || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 382391 GTAGGAGGCGATGTTGAAAGGGACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCAT 382332 Query 30040 ACACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAG 30092 || || ||||| ||||| | ||||||| || ||| | ||||||||| | Sbjct 382331 GCAGGATAGCTCGCTCGTGTCCGT-GTTCACGTAGAATTGAGCAAGCAAGTGGCACGGCG 382273 Query 30093 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30152 | || ||||| || | ||||||||||| | | | ||| | ||| | Sbjct 382272 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGT 382213 Query 30153 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-G 30211 ||||| | |||| |||||| | | ||| |||||||| || ||| | Sbjct 382212 TCGGGTTCGCCTTGATCGTCTCCACGATGGACCTGATCTGGTCCACCCCT-TCGCCGTCG 382154 Query 30212 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30271 |||| || | || |||| ||||| ||||| || | ||||||||| ||||| || Sbjct 382153 TAGTTCGCTTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 382094 Query 30272 GGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30327 || || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 382093 GGGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCG 382038 Query 30328 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA 30387 || |||||| |||||||||| | | |||| || | ||| | | ||| || Sbjct 382037 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTC 381978 Query 30388 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30446 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 381977 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCG 381919 Query 30447 TGAGGAGGGG 30456 | || || || Sbjct 381918 TCAGCAGCGG 381909 >seq31 Length=1505910 Score = 98.7 bits (108), Expect = 8e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 38198 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 38139 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||| | ||||| || Sbjct 38138 CGCCATTCCCTCCCGCATGACGGT 38115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310221731312