Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 183 3e-41 >seq6 Length=516819 Score = 183 bits (202), Expect = 3e-41 Identities = 475/717 (66%), Gaps = 13/717 (2%) Strand=Plus/Plus Query 34091 CATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAG 34150 |||| |||| ||||||| || | | | | | || ||| | | | ||| | |||| Sbjct 381774 CATGAGGAGCGGCAGTACCTTGAGCTGATTGACCGCATCATGAAGACGGGGATCGTGAAG 381833 Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 | |||||| ||||| ||| ||| || | | |||||| ||||| || | | ||| Sbjct 381834 GAGGACCGCACCGGCGTGGGCACCATCAGCCTCTTCGGCGCACAGATGCGCTTCTCCCTA 381893 Query 34211 CGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | | | ||||||||||||||||| ||||| | |||| |||||| |||| Sbjct 381894 CGCGACAACCGCCTGCCGCTGCTGACGACGAAGCGTGTCTTCTGGCGCGGCGTGTGCGAG 381953 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| || | |||| |||||| | || ||| || | || | Sbjct 381954 GAGCTGCTGTGGTTCCTGCGCGGGGAGACGAACGCGCAGCTGCTGGCGGACAAGGACATT 382013 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| |||| || || || ||||| |||| || || || || Sbjct 382014 CACATCTGGGACGGCAACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACAGAGAAT 382073 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||| ||| | ||||| |||||||| ||||||||| | ||||| ||||| || || Sbjct 382074 AAGGAGATGGACCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGGGCAGATTAC 382133 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 |||| |||||| |||| || | || | ||||||| | || | | | || Sbjct 382134 AAGGGGTTTGAAGCGAACTACGACGGCGAAGGGGTGGACCAGATCAGGTCCATCGTGGAG 382193 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | ||| |||||| | ||| | | | | | || ||||||||| | Sbjct 382194 ACGATCAAGGCGAACCCGAACGACCGCCGCCTTCTATTCACTGCCTGGAACCCGTGCGCG 382253 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---CGCG-- 34621 || | ||||||||| || ||||||||| || ||| ||||||||||| | || Sbjct 382254 CTGCAAAAGATGGCGCTGCCGCCGTGCCACTTGCT-TGCTCAATTCTACGTGAACACGGA 382312 Query 34622 -AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCC 34680 | | ||||| |||||| ||| || || || ||| | |||||||| | || || || Sbjct 382313 CACGAGCGAGCTATCCTGCATGCTGTACCAGCGCTCGTGCGACATGGGTCTCGGCGTCCC 382372 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCG-TGGGGTTGG 34739 |||||||| || ||||| |||||||| | | || || || | || ||| || Sbjct 382373 TTTCAACATCGCCTCCTACGCGCTGCTCACCATCCTCATTGC-CAAGGCGACGGGCCTGC 382431 Query 34740 TTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCG 34796 || || ||||| ||||| || | || || || || |||||| |||||| ||| Sbjct 382432 GGCCCGGTGAGCTTGTGCACACCCTTGGTGACGCCCACGTCTACCGCAACCACGTCG 382488 Score = 183 bits (202), Expect = 3e-41 Identities = 475/717 (66%), Gaps = 13/717 (2%) Strand=Plus/Minus Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA 6608 ||| |||||| |||||| || || || || | || ||||| ||||| || || || Sbjct 382488 CGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGTGTGCACAAGCTCACCGGGCCGCA 382429 Query 6609 ACCCCA-CGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 ||| || | || || || | | |||||||| ||||| || |||||||| || Sbjct 382428 GGCCCGTCGCCTTG-GCAATGAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAAGGG 382370 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT---C 6724 || || | |||||||| | ||| || || || ||| |||||| ||||| | | | Sbjct 382369 ACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCATGCAGGATAGCTCGCTCGTGTCC 382310 Query 6725 GCG---ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 | | ||||||||||| ||| || ||||||||| || ||||||||| | || | Sbjct 382309 GTGTTCACGTAGAATTGAGCA-AGCAAGTGGCACGGCGGCAGCGCCATCTTTTGCAGCGC 382251 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTC 6840 ||||||||| || | | | | | ||| | |||||| ||| | || || Sbjct 382250 GCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGTTCGGGTTCGCCTTGATCGTCTC 382191 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 | | | || | ||||||| | || | || |||| |||||| |||| || Sbjct 382190 CACGATGGACCTGATCTGGTCCACCCCTTCGCCGTCGTAGTTCGCTTCAAACCCCTTGTA 382131 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 || ||||| ||||| | ||||||||| |||||||| ||||| | ||| ||||| Sbjct 382130 ATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCTTATT 382071 Query 6961 AGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 || || || || |||| ||||| || || || |||| |||||||||| | | Sbjct 382070 CTCTGTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAAT 382011 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 || | || ||| || | |||||| |||| | || |||||||||||||||||| Sbjct 382010 GTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCGCGCAGGAACCACAGCAGCTCCTC 381951 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAG 7137 | |||||| |||| | ||||| ||||||||||||||||| | | | | || || Sbjct 381950 GCACACGCCGCGCCAGAAGACACGCTTCGTCGTCAGCAGCGGCAGGCGGTTGTCGCGTAG 381891 Query 7138 GTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197 | | | || ||||| |||||| | | || ||| ||| ||||| |||||| |||| Sbjct 381890 GGAGAAGCGCATCTGTGCGCCGAAGAGGCTGATGGTGCCCACGCCGGTGCGGTCCTCCTT 381831 Query 7198 CCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATG 7254 | | ||| | | | ||| || | | | | | || ||||||| |||| |||| Sbjct 381830 CACGATCCCCGTCTTCATGATGCGGTCAATCAGCTCAAGGTACTGCCGCTCCTCATG 381774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262198281920