Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989975.1_202017-02-07] 36 sequences; 32,196,393 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 125 1e-23 seq28 104 5e-17 seq15 93.3 9e-14 >seq9 Length=594373 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 375270 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 375329 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 375330 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 375389 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 375390 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 375436 >seq28 Length=1168597 Score = 104 bits (114), Expect = 5e-17 Identities = 231/341 (68%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||||| ||||| | ||| | || | |||||||||||||| ||||| | || ||| ||||| Sbjct 904890 GTGAAGATGTAGC-GGCCCGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 904832 Query 273839 ---ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 | ||| | |||| ||| | | ||||||||| || || | ||||| ||||| Sbjct 904831 GCCATCCTTGCGCAGCAGCGGG---ACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCC 904775 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| ||| | ||| || |||||| ||||| || ||| ||| || | || || Sbjct 904774 GACGATCGTCTGCACAAGCGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTA 904715 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 || | ||| | ||||| | | || |||||| |||||||| ||| ||| Sbjct 904714 GCCGGCAAGCTGCACCACCTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAG 904655 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATC 274075 | ||| ||||| ||||||||| || |||| || || || ||||| || | || Sbjct 904654 GATCTTGCGCTGGCCGGGCTTGAAGCCGTCAATCACGCTCGGGATGCTGCGCTCGCAGTC 904595 Query 274076 ATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||| ||||| | |||||| |||||||| | ||||| Sbjct 904594 --GGCGATGGAGAAGAGAATCAGCTCCTTGTCCACAAAGTC 904556 >seq15 Length=618288 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || |||||||||||||| | | || ||||| || || ||| | | || || Sbjct 523649 AGCTTCGTGAAAATGTAGCGCGGGGCGGCGTGGTCGTTACCGAGCTGCTGTCGAGAGCCG 523708 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||||||||| |||| ||| ||| |||||||||| ||| | | | ||| ||||| Sbjct 523709 AACTGACCCTCTGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATC 523768 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGA 273932 |||||||| ||| |||| || || |||||||||||||| Sbjct 523769 TTCACGATGGTCTCCTGCAGCGAGGCCTCGCCGTGGTGA 523807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738717191544