Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 379 2e-100 seq30 161 1e-34 >seq15 Length=633270 Score = 379 bits (420), Expect = 2e-100 Identities = 608/861 (71%), Gaps = 14/861 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| | | |||||||| || | ||| | |||||||| || || | ||| Sbjct 479907 GAGCCGCTGCAGAGAGAGAACCCGTTTCGCTACGTCCTCTTCCCCATTCAGTATCATGAC 479848 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || || | ||||||| || |||||| | ||||| Sbjct 479847 ATCTGGCGCAAGTACAAGGAGCAGGAAAGCTGCATCTGGACGGTGGAGGAGATCGACCTC 479788 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| || ||||||| | || ||||| ||||| || |||||||||||| Sbjct 479787 GGCAACGACATGAAAGACTGGGTGGCACTGGACGACGGGGAGCGGCACTTCATCAAGCAC 479728 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||| ||||| ||||||| ||||||||||| ||| |||||| || | ||||||| Sbjct 479727 GTGCTTGCCTTCTTCGCCGGGAGCGACGGCATTGTCGTCGAGAACCTTGCGCAGCGTTT- 479669 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || ||| ||||| | |||||||| |||||||| || ||| | ||||| Sbjct 479668 TATGAGTGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGA 479609 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||| | |||||||| | ||| ||| || | ||||||||| | | | | |||| Sbjct 479608 GAACATCCACTCGGAGACGTACTCGGTACTGCTGGACACGTACATCACAGACAGC-GAGG 479550 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| || || || |||| ||| ||||||| |||||| |||| ||||||| |||| Sbjct 479549 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCAAGAAGAAGGCAGAGT 479490 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||| | || ||||||| |||| || |||| ||||| ||| | | || | Sbjct 479489 GGGCCGTACGGTGGATCGGGAGCAG---CGCGAGCTTCCAGGAGCGGCTGATCGGGTTTG 479433 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || |||||| |||||||||||||| ||| ||| | || ||||| ||||| | Sbjct 479432 CCGCGGTGGAGGGCATCTTCTTTTCGGGCTCATTCTGCGCGCTGTTCTGGCTGAAGAAGC 479373 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||||| ||||| || || || || ||||||||||||||||| | |||||||| || | Sbjct 479372 GCGGCCTGATGCCGGGGCTAACGTTTAGCAACGAGCTCATCTCGCGCGACGAGGGCCTAC 479313 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GCG 117229 | ||||| || || | ||| ||| ||| | ||| | | | | || | | Sbjct 479312 ACACGGACTTCGCGTGCCTCTTGTACAACTCGCACATCAGGCA-CAAGCTGCCTCGCGAG 479254 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGC 117288 ||||| ||||||| || |||||||| |||||||| ||| ||| || ||| || Sbjct 479253 CGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACGC 479195 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 |||||||||||| ||| | || | || | || |||| |||| |||||||||||||| Sbjct 479194 GCTGCCGGTGCGACTGATTGGCATGAACTCGGAGTTGATGGCGCAGTACATCGAGTTCGT 479135 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 || || | ||||| || ||| | | | |||||||||||| || | | || | Sbjct 479134 GGCGGATCGACTGCTCGTCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCATT 479075 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||||||| | | ||||| Sbjct 479074 CGACTTTATGGAGATGATCTC 479054 >seq30 Length=2596710 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| || ||| | | || || || | | | Sbjct 1328930 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1328871 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 1328870 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1328812 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 1328811 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 1328752 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 1328751 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1328704 Score = 156 bits (172), Expect = 4e-33 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| || ||| | | || || || | | | Sbjct 1329344 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1329285 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 1329284 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1329226 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 1329225 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 1329166 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||||| |||||||||| || ||| ||||| || Sbjct 1329165 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTG 1329126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || ||||| |||||||| || | ||||| ||| ||||||||||||||||||||| || Sbjct 1329023 GCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAGTCC 1328964 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || ||| ||||| || | |||||| Sbjct 1328963 ACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1328931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216012081200