Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 320 1e-82 seq15 248 8e-61 seq30 87.8 2e-12 >seq21 Length=1153175 Score = 320 bits (354), Expect = 1e-82 Identities = 598/865 (69%), Gaps = 10/865 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| |||||||| || || |||||| ||| || ||||||||||| ||||| ||| Sbjct 325707 GCGATAGAGGCAAGGTTACACACGGCCGTCTCCTCCGGCGACGTGTACTCCACAATCTCG 325648 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || | ||| ||||| ||||| || | || ||||||| || | |||||| Sbjct 325647 GTGCACAAATTCGAGCACTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTGTTGCAC 325588 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||||| | ||| ||||| ||||||||||| ||||||||| | ||| || | Sbjct 325587 GCGTCCTTGTACAAGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAAC 325528 Query 23201 CACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || |||| |||| |||| | ||| || ||||||| | ||| Sbjct 325527 CACACCTCCTGCGCCTGAAT-CGTCTTCACGCCGCGGCCCTCCGCCTCGTAGCGCTCGTA 325469 Query 23260 CAA-CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACAC 23317 | ||| || || || |||| || |||||| ||||| |||| || || | | Sbjct 325468 GAGTCGC-TCGAACTCTTCACCATAGCAGTCGCTGAGGCCCGGGCACGTGTTGGGGTC-C 325411 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 || || ||||| | || | | || || |||| || | ||| || | ||| || Sbjct 325410 ATCAGCGTCCACTTCCCCTCGCTCTTTACACGCTTCATGAACAAATCTGGGACCCACAGC 325351 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 || ||||| || ||||| ||||| || |||||||| ||||| |||| |||| Sbjct 325350 GCATAGAAGAGGTCGCGAGCGCGTTGGTCATCTTTGCCCGTGTTGCGCTTCAGCAGCAAA 325291 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||| | || ||||| || ||||| ||||| ||||| ||||| || |||||| | ||| Sbjct 325290 AAGCCAAAGACGTCGGCGTGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCTTGCGCTTG 325231 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||||||| || ||||| ||||| ||||||||| | || | |||||||||||||| Sbjct 325230 CCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATCGGCACGAGC 325171 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCG-AACCTTTTGCTCGAACGTTGTGAAC 23616 ||||| |||| ||| | ||| || | | || || || | |||||| || Sbjct 325170 CCGTTCGACGTGCC-ATTGGTTCCGGCAATGTAGCTTCCAGCGGCGCGGATGTTGTGCAC 325112 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || ||||| || ||| || |||| ||||| | ||||| |||||||| Sbjct 325111 GTGCAGGCCGATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 325052 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC-GCTT 23735 |||||| || |||||||| || || | ||| |||| ||| ||||| ||||||| |||| Sbjct 325051 GATGCCGTCAATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 324992 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 |||| || |||| ||| || ||||| ||||||| || ||| | || |||||||| | Sbjct 324991 TGGG-GTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAAACCCTTCGACATCA 324933 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | | ||| || || || || | ||| ||||| || |||| |||||| |||| Sbjct 324932 GCTCGTATGTCTCACGCACGTTCTCGAGATCCCGGCCGTGAATCCCGAGGGCGACACGCA 324873 Query 23856 TCATCATGTATTGAGGTCTCTCGAC 23880 | | ||| | || || | ||| || Sbjct 324872 TGAACATCTGCTGTGGACGCTCTAC 324848 Score = 98.7 bits (108), Expect = 9e-16 Identities = 284/432 (66%), Gaps = 9/432 (2%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 ||| ||||| | ||||||||| || || || || |||||||| || ||||| || Sbjct 326281 GTTGACCACAGGGAACTCGCCGCTCAGCACACGCCGAACATAAATGTTTGAGGTGAAAGG 326222 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||||| || || ||||| | ||| || ||||| ||||| ||||| | Sbjct 326221 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGCGCAAC 326162 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||||| ||||| | || |||| || | || |||||| | | ||||||||| Sbjct 326161 CAGTAATGAGTTGCGCATGCCGACCTGCCTCACCTTCTCCTTGAGGCTGGCCCAGTCCCA 326102 Query 22633 CAGATC---GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || | | ||| | | || | |||||| || | || | | ||| || || Sbjct 326101 GCGACCACTGTTCGGTCGCGCGTTCTTCCACATGTCAAACTGGAGAATGCCCTCGCTGGC 326042 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCT 22748 ||||||||| | | | || |||||||| || | | || || || || | || || Sbjct 326041 CGGGCTGCCGTTGAAGGTCTCGTACGGGCCCTCCTCCCTCGCCAGCTC-CATCGACGACT 325983 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 | | ||| || | || || ||||||||||| | ||| || | || ||| | ||| Sbjct 325982 CGACCGCCGCGAAGTAGATGGTCTCGAAGATCTCTGCGTTTAA--CCGCTGCGCCTCCGC 325925 Query 22809 T--TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 | | |||||| ||||| | | ||| | |||||| | |||||| || || | || Sbjct 325924 TGAGACAAACGGCAGCCGCATGAGGATGAAAGTGTCCGCAAGACCCTGCACACCAAGGCC 325865 Query 22867 GATCGGTCGGTT 22878 || || ||||| Sbjct 325864 GACGGGGCGGTT 325853 >seq15 Length=633270 Score = 248 bits (274), Expect = 8e-61 Identities = 516/759 (68%), Gaps = 12/759 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || |||||| | || || ||||||| ||| || ||||| |||||| | Sbjct 479739 TTCATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATTGTCGTCGAGAACCTT 479680 Query 57738 GTCGAAAGATTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 | || | |||| | || ||| | ||| | |||||| | || ||||| || || Sbjct 479679 G-CGCAGCGTTTTATGAGTGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCA 479621 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 || || || ||| | || || || | ||| ||| |||| | || |||||| | | Sbjct 479620 GCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTACTGCTGGACACGTACATCAC 479561 Query 57857 GGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCA 57915 |||| ||| ||||| | | ||| | |||||||| | || || |||| | ||| | Sbjct 479560 AGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGAT-CCCGTGCATCAAGA 479502 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||||||||||||| | | ||||| ||| | || | ||| ||| ||| Sbjct 479501 AGAAGGCAGAGTGGGCCGTACGGTGGATCGGGAGCAGCGCGAGC---TTCCAGGAGCGGC 479445 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTT 58034 | |||| ||| ||||| || || || || |||||||||||| || |||| | | || Sbjct 479444 TGATCGGGTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCATTCTGCG-CGCTGTTC 479386 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| |||||||||||||| || || ||||||||||||||| | || |||||| Sbjct 479385 TGGCTGAAGAAGCGCGGCCTGATGCCGGGGCTAACGTTTAGCAACGAGCTCATCTCGCGC 479326 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAA 58151 |||||||| || || || || || |||||||| ||| |||| ||||| | || Sbjct 479325 GACGAGGGCCTACACACGGACTTCGCGTGCCTCTTGTACAACTCGCACATCAGGCACAAG 479266 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | | || || ||| | |||| || ||| || ||||| ||||| ||||| Sbjct 479265 CTGCCTCGCGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTC 479206 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || ||| || || |||||| || | || |||||| || |||||| | ||||| Sbjct 479205 ATCTGCGACGCGCTGCCGGTGCGACTGATTGGCATGAACTCGGAGTTGATGGCGCAGTAC 479146 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331 || ||||| || || || |||| | || || || ||| || |||||| || Sbjct 479145 ATCGAGTTCGTGGCGGATCGACTGCTCGTCTCGCTCGGTGAGGAGAAGCACTACAACGCG 479086 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391 | | || || || |||||| | |||||||||| |||| ||||| ||||| ||||| Sbjct 479085 ACGCAGCCATTCGACTTTATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAG 479026 Query 58392 aaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || || |||| || || || ||||||||||||| Sbjct 479025 AAGAAGGTGGGCGAGTACCAGAAGGCCGGCGTGATGAGC 478987 >seq30 Length=2596710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||| | | || || || ||| Sbjct 1328931 CATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1328872 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 1328871 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1328812 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 1328811 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 1328776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||| | | || || || ||| Sbjct 1329345 CATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1329286 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 1329285 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1329226 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 1329225 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 1329190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763641820400