Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21 98.7 8e-16 seq30 89.7 4e-13 >seq21 Length=1153175 Score = 98.7 bits (108), Expect = 8e-16 Identities = 246/363 (68%), Gaps = 17/363 (5%) Strand=Plus/Minus Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG--CGCTTTTC 130075 || || ||||| |||||||| || |||||||| || || || | || || ||| || Sbjct 325383 ACACGCTTCATGAACAAATCTGGGACCCACAGCGCATAGAAGAGGTCGCGAGCGCGTTGG 325324 Query 130076 T-ATCCTCGGCACCCATGTTACGTTTCAGTT-CAAGGAAATCGTAA-ATGTCGGCGTGCC 130132 | ||| | | ||| |||| || ||||| ||| ||| | || | ||||||||||| Sbjct 325323 TCATCTTTG---CCCGTGTTGCGCTTCAGCAGCAA--AAAGCCAAAGACGTCGGCGTGCC 325269 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGC 130189 | || |||| || | || | |||||||| || || ||| || ||||| |||| || Sbjct 325268 ATGGCTCAAGGTAGACGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGC 325209 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 | | | |||||| |||| |||| ||| | | | | ||||| | |||||| || || | Sbjct 325208 GGGCAGTGTTGTTGAAGACGCGCAGCATCGGCACGAGCCCGTTCGACGTGCCATTGGTTC 325149 Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCC-GCCA 130308 ||||| | || ||| || || | ||| || ||| || || |||||||| ||| Sbjct 325148 CGGCAATGTAGCTTCCAGCGGCGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCAGCCG 325089 Query 130309 AATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTC 130367 || || |||| ||||| || ||||| || || ||||| | || ||||| || Sbjct 325088 CCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCAATGCTGTCGTC 325031 Query 130368 TTT 130370 || Sbjct 325030 CTT 325028 >seq30 Length=2596710 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 1328930 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1328871 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 1328870 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1328811 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 1328810 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1328751 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 1328750 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1328704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 1329344 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1329285 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 1329284 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1329225 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 1329224 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1329165 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 1329164 ATCCAGAAGGAGTCCAC 1329148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725467859675