Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq15 172 1e-37 seq30 165 2e-35 seq21 143 5e-29 seq27 87.8 3e-12 seq23 87.8 3e-12 seq14 87.8 3e-12 seq2 87.8 3e-12 >seq15 Length=633270 Score = 172 bits (190), Expect = 1e-37 Identities = 560/850 (66%), Gaps = 50/850 (6%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| |||||||||||| | ||| |||| Sbjct 478989 TCATCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTACCCT 479048 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||| ||||| || || | | ||| | ||||| | || Sbjct 479049 GCAGCGAGATCATCTCCATAAAGTCGAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCAC 479108 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | || | || || |||||||||||||||||||| ||||| ||||||| Sbjct 479109 CGAGCGAGACGAGCAGTCGATCCGCCACGAACTCGATGTACTGCGCCATCAACTCCGAGT 479168 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||||||||| || || | |||||||| ||||| || ||| || |||| Sbjct 479169 TCATGCCAATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCG 479228 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGA-- 10228 | ||| |||||| ||| | |||| || | | |||||||| | || | ||| Sbjct 479229 CGTCC---ACGATGATCTCCAGCACGCGCTCGCGAGGCAGCTTGTGCCTGATGTGCGAGT 479285 Query 10229 -ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 |||| ||| | || | | ||| |||||||||||||| ||||| ||||||| Sbjct 479286 TGTACAAGAGGCACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGC 479345 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 || || || ||||| || || || || ||||||||| | |||||||| || | Sbjct 479346 TAAACGTTAGCCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAATGAGC 479405 Query 10348 CGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCGAAG- 10400 | ||| |||||| |||||||| ||| ||| ||| || ||||| |||| Sbjct 479406 C--CGAAAAGAAGATGCCCTCCACCGCGGCAAACC----CGATCAGCCGCTCCTGGAAGC 479459 Query 10401 GAGCGGT-CGCGCGA---AAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGG 10456 ||| | | | ||| | ||| ||||||| |||||||||| | | || Sbjct 479460 TCGCGCTGCTCCCGATCCACCGTA-----CGGCCCACTCTGCCTTCTTCTTGATGCACGG 479514 Query 10457 GATCGTCTCGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAG 10510 |||||||| ||| || | | || ||||| | | | | |||| || | || | Sbjct 479515 GATCGTCTGGATCGCGTGCAGCAGCCGCAGCTT-CTCCTCGCTGTCT-GTGAT--GTACG 479570 Query 10511 AGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGC 10570 | || || || | ||||| ||| ||||| | |||| | | |||| | | Sbjct 479571 TG--TCCAGCAGTACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCC 479628 Query 10571 GTAGAACATACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTC 10628 ||||||| || ||| || || | || || ||| ||| | || | |||||| Sbjct 479629 GTAGAACGCGCGCGCCTCTGGCACCTTCACATCACTCATAAAA--CGCTGCGCAAGGTTC 479686 Query 10629 TCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGC 10688 || | || ||||| ||||| || || |||||| | || | ||||||||||||||| ||| Sbjct 479687 TCGACGACAATGCCGTCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGC 479746 Query 10689 TCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCC 10748 || | |||| ||| | ||| ||||||| || || | | ||| | || ||||||| Sbjct 479747 TCCCCGTCGTCCAG--TGCCAC-CCAGTCTTTCATGTCGTTGCCGAGGTCGATCTCCTCC 479803 Query 10749 ACGGTCCAGA 10758 || ||||||| Sbjct 479804 ACCGTCCAGA 479813 >seq30 Length=2596710 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || | | Sbjct 1328704 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 1328763 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 1328764 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1328823 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 1328824 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTCGGCTCCAC 1328882 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||| || || || ||||| ||||| ||||| |||||||| Sbjct 1328883 CTCCAGCGCGATCGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 1328930 Score = 159 bits (176), Expect = 6e-34 Identities = 170/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 || ||||||| |||| ||| ||||||||||| || |||||||| || || | ||| || Sbjct 1329124 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 1329183 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 | || || || | |||||| |||||||| || || | || ||||| || || ||||| Sbjct 1329184 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1329243 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAA 68419 |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || |||| Sbjct 1329244 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTCGGCTCCACCTCCAG 1329302 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || ||||| ||||| ||||| |||||||| Sbjct 1329303 CGCGATCGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 1329344 >seq21 Length=1153175 Score = 143 bits (158), Expect = 5e-29 Identities = 399/603 (66%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 31700 ACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCC 31759 |||||| ||||| || |||| || ||||| || |||||||||| || | ||| || Sbjct 325690 ACACACGGCCGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCACAAATTCGAGCA 325631 Query 31760 CGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCA 31818 | |||| || ||| || ||| | ||| ||| ||||| |||||||| | | Sbjct 325630 CTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTGTTGCACGC-GTCCTTGTACAAGA 325572 Query 31819 CGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTT 31878 | | ||| ||||||||||||||||| | || ||| ||| || || |||| | Sbjct 325571 TGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGCGCCT 325512 Query 31879 TGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCC 31937 | || ||| | | || ||||| | ||||||||| || || |||| |||| Sbjct 325511 GAATCGTCTTCACGC-CGCGGCCCTCCGCCTCGTAGCGCTCGTAGAGTCGCTCGAACTCT 325453 Query 31938 TTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 | ||| || ||| | || || || ||| |||||||| | |||| ||| | Sbjct 325452 TCACCATAGCAGTCGCTGAGGCCCGGGCACGTGTTGGGGTCCATCAGCGTCCACTTCCCC 325393 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 ||| || ||| ||||||||||||| || | ||||| ||| || || || | | Sbjct 325392 TCGCTCTTTACACGCTTCATGAACAAATCTGGGACCCACAGCGCATAGAAGAGGTCGCGA 325333 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 ||||||||| || | ||| ||| || ||||||| ||| | | || ||||| | Sbjct 325332 GCGCGTTGGTCATCTTTGCCCGTGTTGCGCTTCAGCAGCAAAAAGCCAAAGACGTCGGCG 325273 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||| ||||| |||||||| | |||||||| || || ||||||| || Sbjct 325272 TGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 325213 Query 32175 TA---TGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || |||| ||| ||| | | || |||||| || |||| || | ||| |||| Sbjct 325212 TAGCGGGCAG-TGT--TGTTGAAGACGCGCAGCATCGGCACGAGCCCGTTCGACGTGCCA 325156 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 ||||| || || | | ||| | |||| |||| | || |||||||||||||||| Sbjct 325155 TTGGTTCCGGCAATGTAGCTTCCAGCGGCGCGGATGTTGTGCACGTGCAGGCCGATGCCG 325096 Query 32292 CCA 32294 ||| Sbjct 325095 CCA 325093 >seq27 Length=1394890 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 479236 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 479179 >seq23 Length=380839 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 252126 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 252183 >seq14 Length=731007 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 405734 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGACCCCCAC 405791 >seq2 Length=507213 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 482866 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 482923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616697461400