Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 315 1e-80 seq15 284 2e-71 >seq21 Length=1153175 Score = 315 bits (348), Expect = 1e-80 Identities = 976/1475 (66%), Gaps = 53/1475 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| ||| | ||| | || | ||||||| | ||||||||||| |||| |||| Sbjct 326361 GAGCCACTGTAGGAGATAATCTCGTTGCGCATCTGCTCGTTCCACAG-CCCACGCGCGAT 326303 Query 244070 -AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 || || ||| |||| |||| ||||| | ||||| || |||||| || || Sbjct 326302 GAGGTCCATGACGAGGTATTTGTTGACCACAGGGAACTCGCCGCTCAGCACACGCCGAAC 326243 Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 || | ||| | ||| ||||||| || ||| ||||||| || ||||||| ||| Sbjct 326242 ATAAATGTTTGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGA 326183 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG---TGCCTCTGGATGCG 244245 ||| || |||||||||| ||||| | ||| | || |||| |||||| | Sbjct 326182 CGCGGTTGGCATGGGCGCAACCAGTAATGAGTTGCGCATGCCGACCTGCCTCACCTTCTC 326123 Query 244246 ---GAGTCTGAGCTCGTTCCAGTC-CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCC 244301 ||| ||| | || |||| |||| || || ||| |||||| || Sbjct 326122 CTTGAGGCTGGCCCAGTCCCAGCGACCAC-TGTTCG----GTCG-CGCGTTCTT----CC 326073 Query 244302 ACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGAC 244361 ||||||||||||| || | |||| |||| | |||||||| | | ||||| ||| || | Sbjct 326072 ACATGTCAAACTGGAGAATGCCCTCGCTGGCCGGGCTGCCGTTGAAGGTCTCGTACGGGC 326013 Query 244362 CGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAG 244420 | || | ||||||| || | | |||| || ||| ||||||||||||||||| Sbjct 326012 CCTCCTCCCTCGCCAGCTC-CATCGACGACTCGACCGCCGCGAAGTAGATGGTCTCGAAG 325954 Query 244421 ATCATCTT-GTTCATGTCGCGG-GCCTTGCCGCAG-GTGAAGGGGATGCC-CATCATCAT 244476 ||| ||| ||| | ||| | |||| |||| | | || || ||| ||| | || Sbjct 325953 ATC-TCTGCGTTTAAC-CGCTGCGCCT--CCGCTGAGACAAACGGCAGCCGCATGAGGAT 325898 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||| ||| || || |||||||| || | ||||| ||| | || ||| ||||| ||| Sbjct 325897 GAAAGTGTCCGCAAGACCCTGCACACCAAGGCCGACGGGGCGGTTGCGCATGTTGCTGCG 325838 Query 244537 -CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 | | | || ||| ||||| |||||| ||| || ||| || || ||||| |||| Sbjct 325837 GCGCGCCGTCTC-CACAGGGTAGTAGTTGCGGTCAATAACCCGATTCAGATTGCGCGTGA 325779 Query 244596 TCATGCG--GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 || ||| | | ||| | || ||||| || | ||||| | | |||| || Sbjct 325778 TC-TGCTTTGTC-ACGGTGTAGAGAAGCTGGTGGTTGAACTCGC---GCTTCTCG---AT 325727 Query 244654 GGTGATCCTCACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 | || | || || | || |||| ||| ||||| || |||||| ||||| Sbjct 325726 GTCGA------CGAAG-CGAGGCAGCGCGATAGAGGCAAGGTTACACACGGCCGTCTCCT 325674 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 ||| ||||||| |||||||||||||| | || ||||||||| || || |||| Sbjct 325673 CCGGCGACGTGTACTCCACAATCTCGGTGCACAAATTCGAGCACTTGATCGTACCGAGGT 325614 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 || || || |||||| |||||| ||||||||||| | ||||| ||||| || |||| Sbjct 325613 TCTTCTGGTTTGACTTGCTGTTGCACGCGTCCTTGTACAAGATGAACGGCCCGCCCGTCT 325554 Query 244833 CGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCT 244892 ||| ||| | | |||| | ||| | ||| |||| | |||| | | ||| Sbjct 325553 CGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGCGCCTGAATCGTCTT-CACGCCG 325495 Query 244893 TG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT 244951 | ||||| ||||||||||| ||| || ||||||||| || || ||| Sbjct 325494 CGGCCCTCCGCCTCGTAGCGCTCGTAGAGTCGCTCGAACTCTTCACCATAGCAGTCGCTG 325435 Query 244952 AGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGC 245011 ||||| ||||||| ||| ||| || |||||| || || ||| || | || | Sbjct 325434 AGGCCCGGGCACGTGTTGGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTTACACGCTTC 325375 Query 245012 ATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAG 245071 ||||| | || |||| ||| || || | ||||||||| | | | || || || | Sbjct 325374 ATGAACAAATCTGGGACCCACAGCGCATAGAAGAGGTCGCGAGCGCGTTGGTCATCTTTG 325315 Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 || ||||| | ||||| ||||||| ||||||||||| ||||||| ||||| | |||| Sbjct 325314 CCCGTGTTGCGCTTCAGCAGCAAAAAGCCAAAGACGTCGGCGTGCCATGGCTCAAGGTAG 325255 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CGTT 245190 || |||| |||||| |||||| ||| ||||||||||| | | || | ||| Sbjct 325254 ACGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGC-AGTGTTGTT 325196 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||||| |||||| | ||||| | ||||| || ||| ||||| || |||||| Sbjct 325195 GAAGACGCGCAGCATCGGCACGAGCCCGTTCGACGTGCCATTGGTTCCGGCAATGTAGCT 325136 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 || | | | || |||| | | || ||| | ||||| || |||| ||| | Sbjct 325135 TCCAGCGGCGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCAGCCGCCTTGCTGATCAC 325076 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 |||||| ||| | ||||| ||||| || |||||||| |||| | ||| Sbjct 325075 GGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCAATGCTGTCGTCCTTCGACGCCACCAG 325016 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 ||||| ||| || || ||||| ||| ||| | |||||| || || || ||||||| Sbjct 325015 GAAGCACGAGCTCATTTGCGGCTTTGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTG 324956 Query 245431 GGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 ||| ||| | | |||| | | | |||| |||| Sbjct 324955 GGTGAAGAAACCCTTCGACATCAGCTCGTATGTCT 324921 >seq15 Length=633270 Score = 284 bits (314), Expect = 2e-71 Identities = 584/859 (68%), Gaps = 17/859 (2%) Strand=Plus/Minus Query 42294 CAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATT 42353 || ||||||||| || ||||||| || | | || || |||||| | |||||||| Sbjct 479853 CATGACATCTGGCGCAAGTACAAGGAGCAGGAAAGCTGCATCTGGACGGTGGAGGAGATC 479794 Query 42354 GACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTC 42413 ||||| | ||| |||| | | ||||| | ||||| || || | ||| || Sbjct 479793 GACCTCGGCAACGACATGAAAGACTGGGTGGCACTGGACGACGGGGAGCGGCACTTCATC 479734 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGC-CAC 42472 || || | || ||||||||||||| |||||||| ||| |||||||| || || Sbjct 479733 AAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATTGTCGTCGAGAACCTTGCGCAG 479674 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | | || |||| || ||| || ||||||||| |||||||| |||||| | Sbjct 479673 C-GTTTTATGAGTGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGAT 479615 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| ||| |||| | |||||| ||||||||||| || Sbjct 479614 GATGGAGAACATCCACTCGGAGACGTACTCGGTACTGCTGGACACGTACATCACAGACAG 479555 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || ||| ||||| | | || || ||||||| || ||||||||||||||||| Sbjct 479554 CGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCAAGAAGAAGGC 479495 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 || ||||| | ||||||| ||| | ||| | ||| ||| ||||| | | Sbjct 479494 AGAGTGGGCCGTACGGTGGATCGGGAG---CAGCGCGAGCTTCCAGGAGCGGCTGATCGG 479438 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| |||| || |||||||||||||| |||||| | ||| | | | |||||||| || Sbjct 479437 GTTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCATTCTGCGCGCTGTTCTGGCTGAA 479378 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | || | |||||| || || || || ||||| |||||| | |||||||| Sbjct 479377 GAAGCGCGGCCTGATGCCGGGGCTAACGTTTAGCAACGAGCTCATCTCGCGCGACGAGGG 479318 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTC---TCGAGCCACCTCAGGCACAAGC--CC 42887 || || | |||||| || |||||| ||| | ||| ||| |||||||||||| || Sbjct 479317 CCTACACACGGACTTCGCGTGCCTCTTGTACAACTCG---CACATCAGGCACAAGCTGCC 479261 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 ||| ||||| || | || |||||| ||| || ||| | |||||| |||||| || Sbjct 479260 TCG--CGAGCGCGTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATC 479203 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 | ||||||| ||| ||| | ||||||||| || | ||| |||||||| Sbjct 479202 TGCGACGCGCTGCCGGTGCGACTGATTGGCATGAACTCGGAGTTGATGGCGCAGTACATC 479143 Query 43008 CAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CTCAGCCGCCTCTACAACACGCC 43066 ||| ||| || || | || || | | | ||| || | | ||||||| || | Sbjct 479142 GAGTTCGTGGCGGATCGACTGCTCGTCTCGCTCGGTGAGGAGAAG-CACTACAACGCGAC 479084 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 | || |||||||||||||||| |||||| || |||| ||||| ||||| |||||||| Sbjct 479083 GCAGCCATTCGACTTTATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAA 479024 Query 43127 GCGCGTCGCCGACTACCAG 43145 | || | ||| |||||| Sbjct 479023 GAAGGTGGGCGAGTACCAG 479005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333356901200