Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq30 107 2e-18 seq21 100 3e-16 >seq30 Length=2596710 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || ||| Sbjct 1328704 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 1328763 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 1328764 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1328823 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | |||| ||||| Sbjct 1328824 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGGC-TCCAC 1328882 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||| | || || ||||| || ||||| Sbjct 1328883 CTCCAGCGCGATCGTCTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 1328930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || || || |||||||| || |||| ||||| | || Sbjct 1329133 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 1329192 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || ||||||||||| || || || || || || || Sbjct 1329193 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1329252 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || || | |||| ||||| || | | | || Sbjct 1329253 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGGC-TCCACCTCCAGCGCGATCGT 1329311 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || || ||||| || ||||| Sbjct 1329312 CTTGCCGGTGAGCGTCTTCACGAAGATCTGCAT 1329344 >seq21 Length=1153175 Score = 100 bits (110), Expect = 3e-16 Identities = 340/523 (65%), Gaps = 15/523 (3%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||| | |||||| || | ||||||||| ||| || || || ||||| ||||| | Sbjct 325664 TGTACTCCACAATCTCGGTGCACAAATTCGAGCACTTGATCGTACCGAGGTTCTTCTGGT 325605 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | || ||| ||||||| ||||| |||||||| ||| |||| |||||| || | || | Sbjct 325604 TTGACTTGCTGTTGCACGCGTCCTTGTACAAGATGAACGGCCCGCCCGTCTCGATCTGCG 325545 Query 154744 TTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATC----GAT 154797 || | || | | || || || || |||||| || | | | | | | | Sbjct 325544 ACTCCAGGATGG--CAAACCACACCTCCTGCGCCTGAA-TCGTCT--TCACGCCGCGGCC 325490 Query 154798 TTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAAC 154857 | ||| ||| || | ||||| ||| || |||||| || || ||| | | Sbjct 325489 CTCCGC-CTCGTAGCGCTCGTAGAGTCGCTCGAACTCTTCACCATAGCAGTCGCTGAGGC 325431 Query 154858 CGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAA 154917 | || || || ||| ||||| | |||| | | | | ||| || ||||| | Sbjct 325430 CCGGGCACGTGTTGGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTTACACGCTTCATGA 325371 Query 154918 ACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCA 154977 ||||||| || ||||||| || || || | || || || || ||| || |||| Sbjct 325370 ACAAATCTGGGACCCACAGCGCATAGAAGAGGTCGCGAGCGCGTTGGTCATCTTTGCCCG 325311 Query 154978 TGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGG 155037 |||| ||||| | |||||| || | | |||||||||||| ||||| | || |||| Sbjct 325310 TGTTGCGCTTCAGCAGCAAAAAGCCAAAGACGTCGGCGTGCCATGGCTCAAGGTAGACGG 325251 Query 155038 CCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACA 155094 | | ||||| ||||| || || || || ||||||| || || || ||| | | Sbjct 325250 CGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGA 325191 Query 155095 CGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC 155137 |||||| || || | | ||| | | |||||| ||||| || Sbjct 325190 CGCGCAGCATCGGCACGAGCCCGTTCGACGTGCCATTGGTTCC 325148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641708447800