Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 306 4e-78 seq30 138 1e-27 >seq15 Length=633270 Score = 306 bits (338), Expect = 4e-78 Identities = 632/929 (68%), Gaps = 20/929 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || ||||||||||| ||||| || || || || || |||| Sbjct 478990 CATCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTACCCTG 479049 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | |||||| || || || | | | |||||||||||| | | | Sbjct 479050 CAGCGAGATCATCTCCATAAAGTCGAATGGCTGCGTCGCGTTGTAGTGCTTC-TCCTCAC 479108 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAAT 132769 | || ||||||||| | || ||||||||||||||||| |||| ||| || | | Sbjct 479109 CGAGCGAGACGAGCAGTCGATCCGCCACGAACTCGATGTACTGCGCCATCAACTCCGAGT 479168 Query 132770 TAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACC 132828 | | || | ||| |||||||||||||| ||| || ||| || |||||||| ||| Sbjct 479169 TCATGCCAATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCACC 479227 Query 132829 GCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTGCACCAAATGC----- 132882 ||||| || ||| ||| |||||| | || ||| | ||| || ||| Sbjct 479228 GCGTCCACGATGATCTCCAGCACGCGCTC---GCGAGGCAGCTTGTGCCTGATGTGCGAG 479284 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| ||| | ||| || ||||| || | ||||||||| | || ||||| |||||| Sbjct 479285 TTGTACAAGAGGCACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTG 479344 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 || || || | || ||||| |||||||| || || ||||| || | ||| ||| | Sbjct 479345 CTAAACGTTAGCCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAATGAG 479404 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 ||||||||||||| |||||| || || || || | | ||| ||||| ||| | || Sbjct 479405 CCCGAAAAGAAGATGCCCTCCACCGCGGCAAACCCGATCAGCCGCTCCTGGAAGCTCGCG 479464 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 |||| ||||||| || | ||||| || ||||| | |||| |||||| ||||| Sbjct 479465 C---TGCTCCCGATCCACCGTACGGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTC 479521 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGG 133182 | ||| |||| || || || || ||||| || | | ||| ||||| | || Sbjct 479522 TGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCTGTGATGTACGTGTCCAGCAGT 479581 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | |||||||| | ||||||||| | || || ||||| || ||| Sbjct 479582 ACCGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGC 479641 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||||||| | || || ||| ||| |||||| Sbjct 479642 GCCTCTGGCACCTTCACATCACTCATAAAACGCTGCGCAAGGTTCTCGACGACAATGCCG 479701 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 ||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||| || Sbjct 479702 TCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTCCAGT 479761 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 | ||||||| | |||| ||| ||||| | |||||| || |||| | | | || Sbjct 479762 GCCACCCAGTCTTTCATGTCGTTGCCGAGGTCGATCTCCTCCACCGTCC-AGATGCAGCT 479820 Query 133423 T--CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 | | || | |||||| | | ||| ||||| ||| || ||||| || | || | | Sbjct 479821 TTCCTGC-TCCTTGTACTTGCGCCAGATGTCATGATACTGAATGGGGAAGAGGACGTAGC 479879 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 | ||||| || | | |||||||||| Sbjct 479880 GAAACGGGTTCTCTCTCTGCAGCGGCTCC 479908 >seq30 Length=2596710 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| || ||| | | || || ||| | | | Sbjct 1328930 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1328871 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 1328870 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 1328813 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 1328812 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 1328753 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | |||||||| |||||||||| || | ||||| Sbjct 1328752 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1328704 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| || ||| | | || || ||| | | | Sbjct 1329344 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1329285 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 1329284 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 1329227 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 1329226 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 1329167 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | |||||||| |||||||||| Sbjct 1329166 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCG 1329130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169705180800