Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq33 143 2e-29 seq25 84.2 2e-11 >seq33 Length=501070 Score = 143 bits (158), Expect = 2e-29 Identities = 384/585 (66%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 || ||||| | ||||||| || ||||| || |||||||| |||| ||| || || Sbjct 366041 TCGACGTGGTTGCGGTAGACATGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGC 365982 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | | || || | | ||||| || | |||| ||||||||| ||||| Sbjct 365981 AGGCCCGTCGCCTTTGCAATAAGGATGGTGAGTAGCGCGTAGGAGGCGATGTTGAAGGGG 365922 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC---TCCGTC- 29984 || ||||| ||||| || | ||| | |||||| | | || || ||||| | |||| Sbjct 365921 ACGCCGAGACCCATATCGCACGAGCGCTGGTACACCATGCAGGACAGCTCCTTTGCGTCC 365862 Query 29985 --GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 | ||||||| |||||| | ||| ||||| || || ||||| || || | Sbjct 365861 GTGTTCACGTAGAACTGAGCAAGCAAGTGACACGGTGGCAGCGCCATCTTGCTCAGAGCG 365802 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 ||||||||||| | || || ||| | || | |||| | ||||| ||| Sbjct 365801 CACGGGTTCCAGGCAGTGAAGAGGAGGCGGCGATCGTTCGGGTCCGACTTGATGGTCTCC 365742 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTAC 30162 ||| | | | ||| ||||||||| || ||| || ||| | | | ||||| Sbjct 365741 ACGATGGCCTTGATCTGGTCCACCCCCTCGCCATTGTAATCCGCCTCGAAGCCTTTGTAC 365682 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC----TCCCTCTTC 30218 || || ||||| || | ||||||||| ||||| || || || || || ||| | ||| Sbjct 365681 TCGGCCCCGAAGTGACGCCACTGGAAGCCGTAGACAGGACCGAGATCCATCTCCTTATTC 365622 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 |||| ||||| | |||||| ||| || | || |||||| ||||||| || | Sbjct 365621 TCTGTC----AAGCCGCGGCTGTCCAGAAACTCGCGCGAGCCGTTGCCGTCCCAAATATG 365566 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 || ||||| || | ||| | | ||| || || | | ||||||||||||||| Sbjct 365565 GACGCCCTTATCCGCCAGCAGCTGCGCGTTCGTTTCACCGCGCAGGAACCACAGCAGCTC 365506 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 || ||| | |||||| || | ||| ||||| || || || Sbjct 365505 TTCGCAGACACCGCGCCAAAATACGCGCTTTGTCGTCAGTAGCGG 365461 >seq25 Length=437616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52112 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 ||| ||||||||||||||| || ||||| || || || ||||||||||||||||| || Sbjct 23082 CCAAGAGGACATGCCCTTCAACCGCGACGGCGTCGTACCGGACCTCATCATCAACCCTCA 23023 Query 52172 CGCCTTTCCATCCAGGATGACCGT 52195 |||| |||| ||| | ||||| || Sbjct 23022 CGCCATTCCCTCCCGCATGACGGT 22999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615134886635