Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21 459 3e-124 seq15 241 1e-58 seq30 129 6e-25 seq35 96.9 3e-15 >seq21 Length=1153175 Score = 459 bits (508), Expect = 3e-124 Identities = 993/1469 (68%), Gaps = 35/1469 (2%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 || |||| ||||| || || || | || ||||| | ||||||||| ||||| | Sbjct 326309 GCGCGATGAGGTCCATGACGAGGTATTTGTTGACCACAGGGAACTCGCCGCTCAGCACAC 326250 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 |||| | ||| | ||| || || || || || ||||||||||||| | |||||||| Sbjct 326249 GCCGAACATAAATGTTTGAGGTGAAAGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCG 326190 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||| | || || |||||| ||| ||||| | |||||||||| ||| | | | Sbjct 326189 AGGTGGACGCGGTTGGCATGGGCGCAACCAGTAATGAGTTGCGCATGCCGACCTGCCTCA 326130 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGT---GTCACG-----TTCCA 148462 || ||| || |||||||||||| || | || || ||| || ||||| Sbjct 326129 CCTTCTCCTTGAGGCTGGCCCAGTCCCAG--CGACCACTGTTCGGTCGCGCGTTCTTCCA 326072 Query 148463 CATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522 |||||| |||| |||||||| ||| || |||||||| | | | | |||||| || Sbjct 326071 CATGTCAAACTGGAGAATGCCCTCGCTGGCCGGGCTGCCGTTGAAGGTCTCGTACGGGCC 326012 Query 148523 GTGCGCCGCCGCCAGTTCGCAGCT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 | | || |||||| || || | || ||||| ||| || |||| || |||||| | Sbjct 326011 CTCCTCCCTCGCCAGCTC-CATCGACGACTCGACCGCCGCGAAGTAGATGGTCTCGAAGA 325953 Query 148582 TTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACG 148641 | | ||| | | || |||| | | | |||||| |||| | | || | Sbjct 325952 TCTCTGCGTTTAACCGCTGCGCCTCCGCTGAGACAAACGGCAGCCGCATGAGGATGAAAG 325893 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 ||| ||||| ||||| || || | ||| | ||| |||| |||||| | |||||| Sbjct 325892 TGTCCGCAAGACCCTGCACACCAAGGCCGACGGGGCGGTTGCGCATGTTGCTGCGGCGCG 325833 Query 148702 CGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 | |||| | || |||| ||||||||| || | | | ||||||||| | | || Sbjct 325832 CCGTCTCCACAGGGTAGTAGTTGCGGTCAATAACCCGATTCAGATTGCGCGTGATCTGCT 325773 Query 148762 TTGTAATTCTGCGCAGCAATTCA------AAATCGTACTTGTC-ATCTACGATGCATCGG 148814 |||| | || || | | || ||| ||| || || | ||| | | || Sbjct 325772 TTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCGCGCTTCTCGATGT-CGACGAAGCGA 325714 Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || ||||||||||| || || |||||||||||||| ||||| | ||||||| || Sbjct 325713 GGCAGCGCGATAGAGGCAAGGTTACACACGGCCGTCTCCTCCGGCGACGTGTACTCCACA 325654 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 ||||||| ||||| ||| ||| |||||| || | |||||| || || ||||||| Sbjct 325653 ATCTCGGTGCACAAATTCGAGCACTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTG 325594 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG 148994 ||||||||||||||||||| ||| |||| ||||| || || | ||||| |||| ||| Sbjct 325593 TTGCACGCGTCCTTGTACAAGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 325534 Query 148995 --AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATA 149052 || | | || |||||||| | | || | || ||| |||||| |||||| Sbjct 325533 GCAAACCA--CACCTCCTGCGCCTGAATCGTCTTCACGCCGCGGCCCTCCGCCTCGTAGC 325476 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 || || ||||||||| | || || ||||| ||| ||| || |||||| ||| | Sbjct 325475 GCTCGTAGAGTCGCTCGAACTCTTCACCATAGCAGTCGCTGAGGCCCGGGCACGTGTTGG 325416 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 || ||| |||| |||| || || | || |||||||| |||| ||| || |||| Sbjct 325415 GGTCCATCAGCGTCCACTTCCCCTCGCTCTTTACACGCTTCATGAACAAATCTGGGACCC 325356 Query 149173 AGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 | ||||| || | |||||||| |||| ||| ||| || |||| ||||||| ||| Sbjct 325355 ACAGCGCATAGAAGAGGTCGCGAGCGCGTTG--GTCATCTTTGCCCGTGTTGCGCTTCAG 325298 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | | || || | ||| |||||||| ||||||| ||| || |||| |||||||| Sbjct 325297 CAGCAAAAAGCCAAAGACGTCGGCGTGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCTT 325238 Query 149291 GCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| |||||||||||| |||| ||| | ||||||| || || || | ||| || Sbjct 325237 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATCGG 325178 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCC-GCGCGCTCGCACTT 149406 | | || | | ||||| || || | |||| || || ||| || || | | Sbjct 325177 CACGAGCCCGTTCGACGTGCCATTGGTTCCGGCAATGTAGCTTCCAGCG-GCGCGGATGT 325119 Query 149407 TGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 ||||||||| | |||||||||||| |||| ||| ||| | ||||| || ||| Sbjct 325118 TGTGCACGTGCAGGCCGATGCCGCCAGCCG-CCTTGCTGATCACGGCGCACTCCTTCAGC 325060 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || ||||||||| || ||||||||| |||| | || ||| |||||||||| |||| Sbjct 325059 GTGTCGTAGATGCCGTCAATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATT 325000 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 ||||| | |||||||| ||| | ||| || ||||||| || || | || Sbjct 324999 TGCGGCTTTGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAAACCCTTC 324940 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||||| |||||| | ||| ||||| || | || ||| || || || | |||| Sbjct 324939 GACATCAGCTCGTATGTCTCACGCACGTTCTCGAGATCCCGGCCGTGAATCCCGAGGGCG 324880 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTC 149674 || ||||| | ||| ||||| || ||||| Sbjct 324879 ACACGCATGAACATCTGCTGTGGACGCTC 324851 >seq15 Length=633270 Score = 241 bits (266), Expect = 1e-58 Identities = 381/540 (71%), Gaps = 7/540 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||||||||| || ||||| || ||||| || || |||| || ||| || | | Sbjct 479005 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTC 479064 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 |||||| ||||| || | ||||||| ||| ||| || || | | |||||||| Sbjct 479065 CATAAAGTCGAATGGCTGCGTCGCGTTGTAGTGCTTCTCCTCACCGAGCGAGACGAGCAG 479124 Query 120471 TCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 ||| ||||| || ||||| ||||||| ||| ||| ||| || ||||||||| | || Sbjct 479125 TCGATCCGCCACGAACTCGATGTACTGCGC-CATCAACTCCGAGTTCATGCCAATCAGTC 479183 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 |||||||| || || || || ||||| ||| |||| |||||| ||| || || Sbjct 479184 GCACCGGCAGCG-CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATC 479242 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | |||| | || |||| |||||| |||| ||| ||| | |||||||| Sbjct 479243 TCCAGCACGCGCTCGCGAGGCAGCTTGTGCCTGATGTGCGAGTTGTACAAGAGGCACGCG 479302 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||||||||| ||||||||||||||||| || ||||||||||||||||| || || ||| Sbjct 479303 AAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTAAACGTTAGCCCCGGC 479362 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 || | ||| | |||| | |||| | ||| || |||||||||||| | |||| Sbjct 479363 ATCAGGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAATGAGCCCGAAAAGAAGATGCCC 479422 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 ||||| |||||| ||| || ||||| || |||| |||| |||||||| Sbjct 479423 TCCACCGCGGCAAACCCGATCAGCCGCTCCTGGAAGCTCGC---GCTGCTCCCGATCCAC 479479 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 | ||||||||| ||||| || | |||||| ||| || || ||||| ||||||| Sbjct 479480 CGTACGGCCCACTCTGCCTTCTTCTTGATGCACGGGATCGTCTGGATCGCGTGCAGCAGC 479539 >seq30 Length=2596710 Score = 129 bits (142), Expect = 6e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | | |||| ||||| ||||||||||| Sbjct 1329148 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 1329207 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1329208 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1329267 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| | |||||||| || | | || || |||||||| || || Sbjct 1329268 ACGTTCTCGATGGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTGAGCGTC 1329327 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 1329328 TTCACGAAGATCTGCATGACT 1329348 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | | |||| ||||| ||||||||||| Sbjct 1328734 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 1328793 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1328794 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1328853 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| | |||||||| || | | || || |||||||| || || Sbjct 1328854 ACGTTCTCGATGGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTGAGCGTC 1328913 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1328914 TTCACGAAGATCTGCATG 1328931 >seq35 Length=424964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 19954 CACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCAGTA 20013 |||||||||||||||| ||| || | || ||||||||||||| ||||| ||||||| Sbjct 366184 CACGCGCACGTAGCCCATCTCACCCCACTCCTCGCCCCACGAGTTCTTGATAATCCAGTA 366243 Query 20014 CGGCACGTTG-TTCTCGACGCCGTAGCCCACGAGCAGCACCGCGTGGTTCAG 20064 ||| || ||| | ||| | | |||| || ||||||||||| |||||||||| Sbjct 366244 CGGAACCTTGCTACTC-ATGTCGTACCCGACGAGCAGCACACCGTGGTTCAG 366294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417808833800