Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 300 1e-76 seq15 116 4e-21 >seq21 Length=1153175 Score = 300 bits (332), Expect = 1e-76 Identities = 965/1457 (66%), Gaps = 63/1457 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| | |||||||| ||||||||| | | ||| | || ||||||||| Sbjct 326280 TTGACCACAGGGAACTCGCCGCTCAGCACACGCCGAACATAAATGTTTGAGGTGAAAGGC 326221 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| ||||| |||||| ||| ||| Sbjct 326220 TCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGCGCAACC 326161 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||||| || |||| ||| | | | || ||||| | | ||||||||| Sbjct 326160 AGTAATGAGTTGCGCATGCCGACCTGCCTCACCTTCTCCTTGAGGCTGGCCCAGTCCCAG 326101 Query 147073 ATCGACGAGGGC---GTCACG-----TTCCACATGTCGTACTGGAGCACTCC-TCGACTG 147123 |||| | | ||| || ||||||||||| ||||||| | || ||| ||| Sbjct 326100 --CGACCACTGTTCGGTCGCGCGTTCTTCCACATGTCAAACTGGAGAATGCCCTCG-CTG 326044 Query 147124 GCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTT-GC 147182 || || ||||| ||| || ||| || || | ||||| || || | | Sbjct 326043 GCCGGGCTGCCGTTGAAGGTCTCGTACGGGCCCTCCTCCCTCGCCAGCTC-CATCGACGA 325985 Query 147183 CTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTC 147242 ||||| ||| | |||| ||||| ||| ||| | | ||||| || | || || | Sbjct 325984 CTCGACCGCCGCGAAGTAGATGGTCTCGAAGATCTCTGCGTTTA--ACCGCTGCGCCTCC 325927 Query 147243 GCTCTCGTAA--GGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACG 147300 ||| || |||| |||| || | || | || || | |||||| | ||| | | Sbjct 325926 GCTGAGACAAACGGCAGCCGCATGAGGATGAAAGTGTCCGCAAGACCCTGCACACCAAGG 325867 Query 147301 CCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCG 147359 |||| || || | || | ||||||||| ||| || | | || |||| |||||| Sbjct 325866 CCGACGGGGCGGTTGCGCAT-GTTGCTGCGGCGCGCCGTCTCCACAGGGTAGTAGTTGCG 325808 Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTA-CAACTTTAGTTATTGTTTTGAGTTTCTCGA 147418 ||||||| | || || || ||| | | |||| || | || | ||| || | Sbjct 325807 GTCAATAACCCGATTCAGATTGCGCGTGATCTGCTTT-GTCACGGTGTAGAGAAGCTGGT 325749 Query 147419 AATCATAAGTCCCGTCTTCGACACGT--ACGCATTGGTTCACGGCGATAGACGCCAGATT 147476 | || || || |||| | || ||| | | || |||||||| || || || Sbjct 325748 GGTTG-AACTCGCG-CTTCTCGATGTCGACGAAGCGAGGCAGCGCGATAGAGGCAAGGTT 325691 Query 147477 GCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGC 147535 || ||||||||||| || |||| || |||||| ||| || |||| ||||| || || Sbjct 325690 ACACACGGCCGTCTCCTCCGGCGACG-TGTACTCCACAATCTCGGTGCACAAATTCGAGC 325632 Query 147536 ATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCA 147595 | || || || | || | ||| || || | ||||||||||| ||| | | | Sbjct 325631 ACTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTGTTGCACGCGTCCTTGTACAAGA 325572 Query 147596 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCG 147652 || |||| ||||| ||||||| |||| || | ||| ||||| || ||||||| Sbjct 325571 TGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCA---CACCTCCTGCG 325515 Query 147653 CTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACT 147712 | | | | || | ||||||||| ||||| |||||||| | ||||| |||| Sbjct 325514 CCTGAATCGTCTTCACGCCGCGGCCCTCCGCCTCGTAGCGCTCGTAGAGTCGCTCGAACT 325455 Query 147713 CGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGACACATCAGCGACCACATG 147771 | || || ||||| ||| ||||| || ||| || || || | |||||||| |||| | Sbjct 325454 CTTCACCATAGCAGTCGCTGAGGCCCGGGCACGTGTTGGGGTC-CATCAGCGTCCACTTC 325396 Query 147772 TCGTC-CGCGTTA-ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT 147829 | || | | ||| |||| || || |||| ||| || ||||||||||| || | || | Sbjct 325395 CCCTCGCTCTTTACACGCTTC--ATGAACAAATCTGGGACCCACAGCGCATAGAAGAGGT 325338 Query 147830 CGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGAT 147887 ||| |||| ||| || || |||| ||||||| |||| | | || | ||| Sbjct 325337 CGCGAGCGCGTTG--GTCATCTTTGCCCGTGTTGCGCTTCAGCAGCAAAAAGCCAAAGAC 325280 Query 147888 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTG 147944 |||||||||||| || |||| ||||||||| | || || || ||||| |||||||| Sbjct 325279 GTCGGCGTGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTG 325220 Query 147945 GTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT 148004 ||| || | ||| | ||||||| || ||||||| ||| || | || ||| ||| || Sbjct 325219 GTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATCGGCACGAGCCCGTTCGACGT 325160 Query 148005 GCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCC 148061 ||| ||||| || | || | ||| || ||| || | | |||||||| | ||| Sbjct 325159 GCCATTGGTTCCGGCA---ATGTAGCTTCCAGCGGCGCGGATGTTGTGCACGTGCAGGCC 325103 Query 148062 AATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 |||||||| |||| | ||| | || | ||||| || || || |||||||||| Sbjct 325102 GATGCCGCCAGCCG--CCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCG 325045 Query 148120 TCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGT 148178 || |||||||||| || |||||| | || || ||||| | ||||||||| | | || Sbjct 325044 TCAATGCTGTCGTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTTGGGGT 324986 Query 148179 TCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTCATCATGCGA 148236 || || ||| ||||| || | ||||| || || || || || ||||| Sbjct 324985 GCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAAACCCTTCGA--CATCAGCTCG 324928 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || |||||| ||| |||| || ||||||||| || || ||||| ||||||| | Sbjct 324927 TATGTCTCACGCACGTTCTCGAGATCCCGGCCGTGAATCCCGAGGGCGACACGCATGAAC 324868 Query 148297 ATGTGCTGTGGTCGTTC 148313 || |||||||| || || Sbjct 324867 ATCTGCTGTGGACGCTC 324851 >seq15 Length=633270 Score = 116 bits (128), Expect = 4e-21 Identities = 245/353 (69%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||| | |||||||| || ||||| || |||||| | |||||||||||||| || |||||| Sbjct 479370 GGCCTGATGCCGGGGCTAACGTTTAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACAC 479311 Query 46968 ACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCG-GA-CA 47025 |||||||| ||||| |||| ||||| ||| | | | | || | |||| || | Sbjct 479310 ACGGACTTCGCGTGCCTCTTGTACAACTCGCACATCAGGCACAAGCT-GCCTCGCGAGCG 479252 Query 47026 CGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GC 47083 || | ||| || | ||| ||||||| |||||| ||||| | ||||| || Sbjct 479251 CG-TGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGC 479195 Query 47084 GCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTT 47141 |||||| || || | || | ||||||||| | ||| ||| ||| | || || ||||| Sbjct 479194 GCTGCCGGTGCGAC-TGATTGGCATGAACTCGGAGTTGATG-GCGCAGTACATCGAGTTC 479137 Query 47142 GTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCG 47201 ||||||||||| ||| | || |||||| | ||| | | || || | || Sbjct 479136 GTGGCGGATCGACTGCTCGTCTCGCTCGGTGAGGAGAAGCACTACAACGCGACGCAGCCA 479077 Query 47202 TTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 || || |||||| | | || ||||| |||| || || || || |||||||| Sbjct 479076 TTCGACTTTATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAA 479024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608250968200