Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 141 1e-28 seq16 86.0 8e-12 seq30 82.4 1e-10 seq17 82.4 1e-10 >seq21 Length=1153175 Score = 141 bits (156), Expect = 1e-28 Identities = 556/863 (64%), Gaps = 15/863 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | || || || |||||||| ||| |||||||| | | Sbjct 325713 GGCAGCGCGATAGAGGCAAGGTTACACACGGCCGTCTCCTCCGGCGACGTGTACTCCACA 325654 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || || || || | ||| ||||| || | ||||| ||||| ||| || Sbjct 325653 ATCTCGGTGCACAAATTCGAGCACTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTG 325594 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| |||||||| | ||| | ||| |||||||| |||| || | || || Sbjct 325593 TTGCACGCGTCCTTGTACAAGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 325534 Query 111410 GCCTTCCAAACATCG-GCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| ||| | || ||| || |||||||||||||| Sbjct 325533 GCAAACCACACCTCCTGCGCCTG----AATCGTCTTCACGCCGCGGCCCTCCGCCTCGTA 325478 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 |||||| || ||||| ||||| | || |||| ||| || || | ||| Sbjct 325477 GCGCTCGTAGAGTCGCTCGAACTCTTCACC-ATAGCAGTCGCTGAGGCCCGGGCACGTGT 325419 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 || | || | ||| | || | || || ||||||||||| | ||||| | Sbjct 325418 TGGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTTACACGCTTCATGAACAAATCTGGGA 325359 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||||| | | ||||| || | | || || || | || |||| | | Sbjct 325358 CCCACAGCGCATAGAAGAGGTCGCGAGCGCGTTGGTCATCTTTGCCCGTGTTGCGCTTCA 325299 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 | | || | | || || ||||||||||||||||| ||||| |||| | |||| Sbjct 325298 GCAGCAAAAAGCCAAAGACGTCGGCGTGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCT 325239 Query 111705 TTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 | || ||| | | || | || ||||| || ||| ||| || ||||| ||||| | Sbjct 325238 TGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATCG 325179 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT-ATTGGCTCTCACA 111820 | | | || | || ||||| || || ||| || || | ||| | | Sbjct 325178 GCACGAGCCCGTTCGACGTGCCATTGGTTCCGGCAATGT-AGCTTCCAGCGGCGCGGATG 325120 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || | ||||| || || || |||||| ||| ||| || |||||| | || Sbjct 325119 TTGTGCACGTGCAGGCCGATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGC 325060 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | ||||| |||| || ||| ||||| || | |||||||| | ||| Sbjct 325059 GTGTCGTAGATGCCGTCAATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATT 325000 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 ||||| |||| || || || ||||||||||| ||||| ||||| |||| | ||| | Sbjct 324999 TGCGGCTTTGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAAACCCTTC 324940 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||||||||||| || || | || ||||| || |||| ||| Sbjct 324939 GACATCAGCTCGTATGTCTCACGCACGTTCTCGAGATCCCGGCCGTGAATCCCGAGGGCG 324880 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || ||||||||||| | |||||| Sbjct 324879 ACACGCATGAACATCTGCTGTGG 324857 >seq16 Length=742178 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 210802 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 210743 Query 145344 GGTAGGA 145350 ||||||| Sbjct 210742 GGTAGGA 210736 >seq30 Length=2596710 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1558929 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1558870 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1558869 CAGGTAGGAG 1558860 >seq17 Length=806429 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 604775 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 604834 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 604835 CAGGTAGGAG 604844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028114052000