Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21 188 8e-43 seq30 152 6e-32 seq15 102 9e-17 seq7 82.4 9e-11 >seq21 Length=1153175 Score = 188 bits (208), Expect = 8e-43 Identities = 562/854 (66%), Gaps = 21/854 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || || || ||||||||| ||| || | || |||| || || || |||||| Sbjct 325701 GAGGCAAGGTTACACACGGCCGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAC 325642 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 ||||| || |||| || ||||| ||||| ||||||||||||||| |||||| |||||| Sbjct 325641 AAATTCGAGCACTTGATCGTACCGAGGTTCTTCTGGTTTGACTTGCTGTTGCACGCGTCC 325582 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| | ||| |||| || ||||||| ||| |||| |||||||| ||| | | Sbjct 325581 TTGTACAAGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACC 325522 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147 || |||||| | | ||| | ||| || ||| | || ||| || ||| Sbjct 325521 TCCTGCGCCTGAATCGTCTTCACGCCGCGGCCCTCCGCCTCGTAGCGCTCGT-AGAGTCG 325463 Query 81148 -TCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||||||| |||| | | || || ||||| | |||||| ||| ||| |||||| Sbjct 325462 CTCGAACTCTTCACCATAGCAG-TCGCTGAGGCCCGGGCACGTGTTGGGGTCCATCAGCG 325404 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| | ||| ||| |||| ||||||||| || |||| ||| || || || Sbjct 325403 TCCACTTCCCCTCGCTCTTTACACGCTTCATGAACAAATCTGGGACCCACAGCGCATAGA 325344 Query 81266 ACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 | |||||||| |||||| || || | ||| |||| | || | | |||| | Sbjct 325343 AGAGGTCGCG--AGCGCGTTGGTCATCTTTGCCCGTGTTGCGCTTCAGCAGCAAAAAGCC 325286 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380 | || ||| || ||||||||||| || || ||||||| | |||||||| | ||| Sbjct 325285 AAAGACGTCGGCGTGCCATGGCTCAAGGTAGACGGCGAAGGCGCCCTTGCGCTTGCCGCC 325226 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||||||| ||||| |||||||| ||| || || |||| ||| || | || || | Sbjct 325225 GCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATCGGCACGAGCCCGTT 325166 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 ||| || || || || | || || |||||| | ||| | || Sbjct 325165 CGACGTGCCATTGGTTCCGGCAATGTAGCTTCCAGCGGCGCGGATGTTGTGCACGTGCAG 325106 Query 81501 ACCGATGCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 |||||||| || | | ||| ||| | | |||| || |||| || || || || Sbjct 325105 GCCGATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCC--TTCAGCGTGTCGTAGATG 325048 Query 81559 CCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 || || ||||| || | ||| | | || || ||| | |||| ||| || || || Sbjct 325047 CCGTCAATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCT---CATTTGCGGCTTT 324991 Query 81616 TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGG 81675 | |||||| ||||| || || || || ||||| |||| ||| || |||||||| Sbjct 324990 GGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAAACCCTTCGACATCAGC 324931 Query 81676 TCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATA 81735 || || || || ||| | ||| |||||||| |||| || |||||||| Sbjct 324930 TCGTATGTCTCACGCACGTTCTCGAGATCCCGGCCGTGAATCCCGAGGGCGACACGCATG 324871 Query 81736 AACATGTACTGGGG 81749 ||||| | ||| || Sbjct 324870 AACATCTGCTGTGG 324857 Score = 100 bits (110), Expect = 3e-16 Identities = 284/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||||| ||||||||| | | | | ||||| ||||| ||| || | Sbjct 897978 GACGGCTTCAAGCCGGGTCAGCGCAAGATCCTTTTCTCCTGCTTCAAGCGCAACTTGGTG 898037 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||| ||||| | |||||| | |||||||| | ||||| | ||||| ||||| Sbjct 898038 AACTCCATCAAGGTTGTGCAGCTTGCCGGCTACGTCTCCGAGCACTCCGCCTACCACCAT 898097 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 |||||| ||||||| | || || ||| | || ||| ||||||| || || Sbjct 898098 GGCGAGCAGTCGCTCGTGCAGACGATCGTCGGGATGGCGCAGGACTTTGTGGGCAGCAAC 898157 Query 32164 AACCTGAACTTACTCGAGCCATC-TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| || | || | || | ||| ||||| || || || || ||| |||||||| Sbjct 898158 AACGTGCCGCTGCT-GCGCAAGGATGGCCAGTTCGGTACGCGTCTTCACGGAGGCAAGGA 898216 Query 32223 TGCTGCGAGCTCC-CGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATTTT 32279 ||| |||| || |||||||||||||| ||| ||| || || || | ||| Sbjct 898217 CCATGC-AGCTGGTCGCTACATCTTCACCCGGCTCATGCAGGTTGCCCGGGCCATCTTTC 898275 Query 32280 CGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCC 32339 |||| | ||||| ||| || ||||||| || ||||| | || ||||| Sbjct 898276 --ACCCCGCCGACGACTTTGTGGTCGAGTACAAAGACGACGACGGCCTCTCTGTGGAGCC 898333 Query 32340 GGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAAC 32399 | | |||| || || | |||||| |||||||||| | |||||||| || Sbjct 898334 CTTCTATTACATCCCTGTCATCCCGATGGCGCTGGTGAACGGCACGACTGGCATCGGCAC 898393 Query 32400 GGGGTTCAG 32408 ||||||||| Sbjct 898394 GGGGTTCAG 898402 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 31200 GGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCAC 31259 ||| || || |||||||||||||||||| ||| || | | || ||| ||||| Sbjct 897140 GGGCATCCCAAAGCTCGACGACGCCAACGAGGCGGGCGGCAAGAACAGCCACCGCTGCAC 897199 Query 31260 GCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCT-TGCTATTGCTGGCTTGAGTGTTG 31318 ||| || | ||||||||||||||||||||| |||| ||| | || ||| || || Sbjct 897200 GCTGATCCTAACCGAGGGTGACTCGGCAAAGACGCTGTGC-ACGGCAGGCCTGGCGGTGA 897258 Query 31319 TGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACG 31378 || ||| | | ||||||||||| || || |||||||| | ||||| || || | Sbjct 897259 AGGATCGCGACTATTATGGGGTGTTTCCTCTGCGCGGCAAGCCCCTCAACGTGCGCGAGG 897318 Query 31379 CCTC 31382 | || Sbjct 897319 CGTC 897322 >seq30 Length=2596710 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 1328930 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1328871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 1328870 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1328811 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 1328810 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1328751 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 1328750 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1328704 Score = 147 bits (162), Expect = 2e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 1329344 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1329285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 1329284 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1329225 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 1329224 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1329165 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 |||| ||||| ||||| || || || || |||| || || Sbjct 1329164 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 1329124 >seq15 Length=633270 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| ||||| || || |||||||| || |||||||| | | |||||||| || Sbjct 479436 TTTGCCGCGGTGGAGGGCATCTTCTTTTCGGGCTCATTCTGCGCGCTGTTCTGGCTGAAG 479377 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| ||||||||||| || || ||||| |||||||| ||||| || |||||||| Sbjct 479376 AAGCGCGGCCTGATGCCGGGGCTAACGTTTAGCAACGAGCTCATCTCGCGCGACGAGGGC 479317 Query 64849 CTCCAC 64854 || ||| Sbjct 479316 CTACAC 479311 >seq7 Length=600638 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||||||||||||||||||| | | || |||| | |||||||||||||| Sbjct 494006 GAAGGTGGCGCAGCTGTCGGGCTACATCTCGGAAGTGTCGGCGTTCCACCACGGCGAGGC 493947 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| || || || || | || || ||||| || | || ||| | || Sbjct 493946 CTCGCTGCAGGAGACGATCGTGAAGATGGCGCAAAACTTCACTGGCGGCAACAACATCAA 493887 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGC 32206 | | |||| |||| || |||||||| | |||| Sbjct 493886 CCTGCTCGTGCCAGAGGGTCAGTTTGGCTCTCGGC 493852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306871204400