Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20enriettii_20[genbank_20GCA_5F000410755.2_202016-09-30] 495 sequences; 30,761,861 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq33 125 5e-24 seq25 89.7 4e-13 >seq33 Length=501070 Score = 125 bits (138), Expect = 5e-24 Identities = 380/585 (65%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207 || ||||| | ||||||| || ||||| || |||||||| |||| ||| || || Sbjct 366041 TCGACGTGGTTGCGGTAGACATGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGC 365982 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | | || || | | ||||| || | |||| ||||||||| ||||| Sbjct 365981 AGGCCCGTCGCCTTTGCAATAAGGATGGTGAGTAGCGCGTAGGAGGCGATGTTGAAGGGG 365922 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC---TCCATC- 27323 || ||||| ||||| || | ||| | |||||| | | || || ||||| | | || Sbjct 365921 ACGCCGAGACCCATATCGCACGAGCGCTGGTACACCATGCAGGACAGCTCCTTTGCGTCC 365862 Query 27324 --GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 | | ||||| |||||| | ||| ||||| || || ||||| || || | Sbjct 365861 GTGTTCACGTAGAACTGAGCAAGCAAGTGACACGGTGGCAGCGCCATCTTGCTCAGAGCG 365802 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 ||||||||||| | || || ||| | || | |||| | ||||| ||| Sbjct 365801 CACGGGTTCCAGGCAGTGAAGAGGAGGCGGCGATCGTTCGGGTCCGACTTGATGGTCTCC 365742 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTAC 27501 ||| | | | ||| ||||||||| || ||| || || | | | ||||| Sbjct 365741 ACGATGGCCTTGATCTGGTCCACCCCCTCGCCATTGTAATCCGCCTCGAAGCCTTTGTAC 365682 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC----TCCCTCTTC 27557 || || ||||| || | ||| ||||| ||||| || || || || || ||| | ||| Sbjct 365681 TCGGCCCCGAAGTGACGCCACTGGAAGCCGTAGACAGGACCGAGATCCATCTCCTTATTC 365622 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 |||| ||||| | |||||| ||| || | || |||||| ||||||| || | Sbjct 365621 TCTGTC----AAGCCGCGGCTGTCCAGAAACTCGCGCGAGCCGTTGCCGTCCCAAATATG 365566 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 || ||||| || | ||| | | ||| || || | | ||||||||||||||| Sbjct 365565 GACGCCCTTATCCGCCAGCAGCTGCGCGTTCGTTTCACCGCGCAGGAACCACAGCAGCTC 365506 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 || ||| | |||||| || | ||| ||||| || || || Sbjct 365505 TTCGCAGACACCGCGCCAAAATACGCGCTTTGTCGTCAGTAGCGG 365461 >seq25 Length=437616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||| ||||||||||||||| || ||||| || || || ||||||||||||||||| || Sbjct 23082 CCAAGAGGACATGCCCTTCAACCGCGACGGCGTCGTACCGGACCTCATCATCAACCCTCA 23023 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 23022 CGCCATTCCCTCCCGCATGACGGT 22999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369504970832345