Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq76 125 2e-23 seq55 113 1e-19 >seq76 Length=120750 Score = 125 bits (138), Expect = 2e-23 Identities = 294/441 (67%), Gaps = 7/441 (2%) Strand=Plus/Plus Query 230203 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 230262 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 111780 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 111839 Query 230263 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 ||||||| || || || || | |||||| ||||| |||||||||||||| || Sbjct 111840 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 111897 Query 230321 AACAGTTCGGCGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| || | || || ||||||| || |||| | Sbjct 111898 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 111957 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | | |||||| || || || | | ||| |||||||| || ||||| | | Sbjct 111958 TGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 112017 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || || |||||||||||||| || || |||| ||||||||||| ||||| || | Sbjct 112018 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 112077 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 |||| | | || | || || | ||||| ||| |||| | | | || || | | Sbjct 112078 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGATT 112137 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | |||||| | || ||||| || || || || ||||||||||| ||| | || | || | Sbjct 112138 TCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGT 112197 Query 230618 ATCAGAGGCCTGGTGTGATGA 230638 | |||| | | || ||||||| Sbjct 112198 ACCAGAAGGCCGGCGTGATGA 112218 >seq55 Length=202884 Score = 113 bits (124), Expect = 1e-19 Identities = 291/441 (66%), Gaps = 7/441 (2%) Strand=Plus/Minus Query 230203 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 230262 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 180221 GTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 180162 Query 230263 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 ||||||| || || || || | |||||| ||||| |||||||||||||| || Sbjct 180161 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 180104 Query 230321 AACAGTTCGGCGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| || | || || ||||||| || |||| | Sbjct 180103 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 180044 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | | || ||| || || || | | ||| |||||||| || ||||| | | Sbjct 180043 TGCTGGAGATTATTGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 179984 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || || |||||||||||||| || | |||| ||||||||||| ||||| || | Sbjct 179983 CGGTGCGGCTGATTGGCATGAACGCGGAGTTGATGGCGCAGTACATCGAGTTCGTCGCGG 179924 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 |||| | | || | || || | ||||| ||| |||| | | | || || | || Sbjct 179923 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAAT 179864 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | |||||| | || ||||| || || || || ||||||||||| | | || | || | Sbjct 179863 TCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGT 179804 Query 230618 ATCAGAGGCCTGGTGTGATGA 230638 | |||| | | || ||||||| Sbjct 179803 ACCAGAAGGCCGGCGTGATGA 179783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817331741960