Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq76 423 2e-113 seq55 410 1e-109 seq15 156 4e-33 seq27 149 6e-31 seq7 149 6e-31 seq485 91.5 2e-13 seq94 86.0 6e-12 seq90 86.0 6e-12 >seq76 Length=120750 Score = 423 bits (468), Expect = 2e-113 Identities = 623/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 111300 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 111359 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 111360 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 111419 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 111420 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 111478 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 111479 TGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 111538 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 111539 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 111597 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 111598 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 111656 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | ||||||| ||| Sbjct 111657 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 111716 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 111717 TGGGCCGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 111773 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 111774 GCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 111833 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 111834 CGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 111893 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 111894 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 111952 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| | || ||||| |||||||| ||| ||| || ||| | Sbjct 111953 GCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 112011 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 112012 CGCTGCCGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTC 112070 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| || || | | ||| Sbjct 112071 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCG 112130 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | || || ||| | | ||||| Sbjct 112131 TTCGATTTCATGGAGATGATCTC 112153 >seq55 Length=202884 Score = 410 bits (454), Expect = 1e-109 Identities = 618/862 (72%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 180701 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 180642 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 180641 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 180582 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 180581 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 180523 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 180522 TGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 180463 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 180462 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 180404 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 180403 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 180345 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | ||||||| ||| Sbjct 180344 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 180285 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 180284 TGGGCCGTGCGGTGGATCGGGAGCAGTGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 180228 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | || ||||| || ||| ||| | || ||||| ||||| Sbjct 180227 GCCGCGGTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 180168 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 180167 CGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 180108 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 180107 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 180049 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| |||||| | || ||||| |||||||| ||| ||| || ||| | Sbjct 180048 GCGCGTGCTGGAGATTATTGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 179990 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||||| ||| | || | || || |||| |||| ||||||||||||| Sbjct 179989 CGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGTTGATGGCGCAGTACATCGAGTTCG 179930 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| |||||||| | ||| | || | ||||||||| || || | | ||| Sbjct 179929 TCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGT 179870 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | || || ||| | | ||||| Sbjct 179869 TCGAATTCATGGAGATGATCTC 179848 >seq15 Length=500758 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || |||||||| ||| | | || || || | | | Sbjct 223947 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGCCGAGC 224006 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||||||||| |||||||| Sbjct 224007 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 224066 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 224067 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 224126 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||| |||||||||| || ||| ||||| || | ||||||| Sbjct 224127 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 224175 >seq27 Length=379527 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 287 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 346 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| | ||||| Sbjct 347 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 405 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 406 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 465 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 466 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 514 Score = 123 bits (136), Expect = 3e-23 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCT 40766 ||||| || ||||| || ||| | | || || || | | ||||| | | |||| | Sbjct 184 ACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGCGACACGATCGAGAACG-T 126 Query 40767 CAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGC 40826 |||| || || | ||||| ||||||||||| |||||||||| || || |||| ||| Sbjct 125 GAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCGC 66 Query 40827 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCAC 40886 ||||| |||||||| |||| ||||| ||| ||||||||||||||||||||| |||| Sbjct 65 CGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCAC 6 Query 40887 GCTGC 40891 ||||| Sbjct 5 GCTGC 1 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 179 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 238 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 239 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 286 >seq7 Length=654660 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| || ||| | | || || || | | Sbjct 294 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 353 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 354 CGACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGGCGGACC 412 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| ||| ||||| |||||||| ||| | ||||||| |||||| Sbjct 413 AGCAGCCCCTGATCTTCGCCGGCAAGCAGCTGGAGTACGGCCTCACCCTCTCGTACTACA 472 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 473 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 521 >seq485 Length=1379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 176 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 117 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 116 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 58 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 57 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTA 1 >seq94 Length=56758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAG-TGCCCTACTGGGT 73639 || ||||||| ||||||||| || || |||| | | || ||| | || |||||||| Sbjct 55112 CTGAACCACGGCGTGCTGCTCGTTGGGTACGACAT-GACTGGTGAGGTTCCGTACTGGGT 55170 Query 73640 GTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 | |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 55171 GATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 55221 >seq90 Length=71013 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAG-TGCCCTACTGGGT 73639 || ||||||| ||||||||| || || |||| | | || ||| | || |||||||| Sbjct 69720 CTGAACCACGGCGTGCTGCTCGTTGGGTACGACAT-GACTGGTGAGGTTCCGTACTGGGT 69662 Query 73640 GTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 | |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 69661 GATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 69611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216031401920