Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 seq27 100 2e-16 seq2 91.5 1e-13 seq485 86.0 5e-12 >seq15 Length=500758 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 224173 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 224114 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 224113 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 224054 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||||| | ||| ||| Sbjct 224053 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACC 223994 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || | | | ||||||||||||||| || || || || |||||||||| Sbjct 223993 TCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 223945 >seq27 Length=379527 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 513 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 454 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGG 394 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||||| | ||| ||| Sbjct 393 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 334 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 333 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 >seq2 Length=1059033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 133210 TGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACAT 133269 ||||||| |||| ||| || || | ||||||||| || ||||| | || || | | Sbjct 330257 TGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGT 330198 Query 133270 TCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGG 133329 |||| ||||| || ||||| | |||||||||||||| ||||||| || | ||| || | Sbjct 330197 TCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTG 330138 Query 133330 GCATGTACGCCACCAACAAAGAGTT 133354 ||||| || |||| || ||||| Sbjct 330137 GCATGGGGGCAACCAGCAGGGAGTT 330113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTT-GATGCT 134452 |||| |||| |||| | || || | ||| ||||| |||| |||||| ||||| || || Sbjct 329043 ATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC 328984 Query 134453 TTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCT 134512 |||||| ||||| | |||||| | | || || || ||| || |||||| | Sbjct 328983 AC-CAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGT 328925 Query 134513 CGCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTC 134572 ||||| || ||| |||| ||| | | || || ||| ||| |||| | || Sbjct 328924 GGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATC 328865 Query 134573 GTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCA 134625 ||||||||||| | ||||| || ||||||| ||| || || || | ||||| Sbjct 328864 TGCGCCGTGAATGCCGAGAGCAACACGCATGAACATCTGCTGTGGACGCTCCA 328812 >seq485 Length=1379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| ||||| || || ||| |||| || |||||||| || || || |||||||||||| Sbjct 22 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 81 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||||| | ||| ||||| | | | | Sbjct 82 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 141 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || ||||||||||| || || || || |||||||||| Sbjct 142 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827798644464