Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15 131 2e-25 seq27 127 2e-24 seq7 120 3e-22 seq485 104 3e-17 seq45 89.7 6e-13 seq5 89.7 6e-13 seq18 86.0 7e-12 >seq15 Length=500758 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 224161 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 224102 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 224101 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 224042 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 224041 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 223982 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || |||||||| || ||||| ||||| Sbjct 223981 GTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq27 Length=379527 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 501 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 442 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 441 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 382 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 381 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 322 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 321 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 11 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 70 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || |||||||||| ||| || || | | Sbjct 71 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 130 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||||||||| ||||| || | || ||| || ||||| || ||||||| Sbjct 131 CTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCT 186 >seq7 Length=654660 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| | | || || | || Sbjct 509 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAGAGGGTGAGGCCG 450 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 | || |||||||| || ||||| || || |||||||||| ||||| | || ||||||| Sbjct 449 TACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGGATGCCCTCCTTG 390 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 389 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 330 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || ||||| || |||||||| || ||||| |||||| Sbjct 329 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 294 >seq485 Length=1379 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 22 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 81 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 82 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 141 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 142 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 176 >seq45 Length=265335 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 127621 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 127562 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 127561 CCGAGAACTGAA 127550 >seq5 Length=874999 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 161059 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 161000 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 160999 CCGAGAACTGAA 160988 >seq18 Length=488347 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 221292 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 221233 Query 60131 CCGAG 60135 ||||| Sbjct 221232 CCGAG 221228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814083321760